Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c17
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 98  KTYSAVNVLRQK*LIVKKRQNMAVVKTPVLKVILCGEYGVGKSSLFRRFINNTF 259
           K    ++++R+K +I +KR+N     TP + +I+ G+      +L   F   T+
Sbjct: 451 KDRKIMDMVREK-IIEEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIFDTYTY 503


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 252 LLMNLRNNELFPTPYSPHKITFNTGVFTTA 163
           LL N ++ + F    +  ++  N+G+FTTA
Sbjct: 114 LLYNAKDFQTFYKTAAWARLRMNSGMFTTA 143


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 252 LLMNLRNNELFPTPYSPHKITFNTGVFTTA 163
           LL N ++ + F    +  ++  N+G+FTTA
Sbjct: 114 LLYNAKDFQTFYKTAAWARLRMNSGMFTTA 143


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 83  NYDTYKTYSAVNVLRQK*LIVKKRQNMAVVKTPVLKVILCGEY 211
           NY+ Y  Y+  N       +  K   + + + PV   I CG +
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNF 368


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 261 TKVLLMNLRNNELFPTPYSPHKITFNT 181
           +++++ +L+N++L      PH I  N+
Sbjct: 152 SQIVVFDLKNSKLLKQVKIPHDIAINS 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,129
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)