Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c14
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.19 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   3.0  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    24   5.3  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   7.0  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    23   9.2  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 187  WTRWLLVLSSCRGSHFDSGSDKNLLVDLKENVTVHLEAI 303
            W  W+L   S   S   +GS  + L+ LK+N+++H E +
Sbjct: 1519 WRSWILASQSILSSQ--NGSITDALLVLKKNISMHFEGV 1555


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 224 GVISILAATKTY*WT*RKTSPFTLKRLTG 310
           G   I+   K+Y W  ++TSP  L+ L G
Sbjct: 773 GAFLIVTGQKSYLWFHQRTSPLLLQDLLG 801


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 99  TIISKCVLCCCEETIDNVI 155
           T+ISKC L   E TIDN I
Sbjct: 38  TLISKCSLLNTELTIDNRI 56


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 96  LTIISKCVLCC 128
           LTIISK VLCC
Sbjct: 321 LTIISKQVLCC 331


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 40  RLLYVMKFVFCLF 78
           +L +++ F+FCLF
Sbjct: 470 KLFFILSFIFCLF 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,227,263
Number of Sequences: 5004
Number of extensions: 19528
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)