Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c14
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323...    28   1.6  
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143...    28   2.1  
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418...    27   4.9  
01_06_0318 - 28434817-28435197,28435333-28435461                       26   8.5  

>09_04_0683 -
           19431034-19431495,19431632-19431997,19432055-19432326,
           19433621-19433686,19433924-19433978,19434509-19434577,
           19435200-19435307,19435394-19435462,19435883-19436038,
           19436089-19436229,19436514-19436568,19437103-19437233,
           19437382-19437486
          Length = 684

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 12  WLFAWXRFNEVIVCNEICFLFVYIXNKILTIISKCVLCC-CEETIDNVIV 158
           WL      NEV +    C+    + ++ L+   +CVLC  CEETID+++V
Sbjct: 523 WLVLPPFHNEVALNR--CWTADRLRSRGLSHPDRCVLCDQCEETIDHLLV 570


>01_05_0195 -
           19111983-19112477,19112646-19113950,19114053-19114322,
           19118884-19118950,19119229-19119284,19119530-19119590,
           19120181-19120297,19120570-19120682,19120774-19120848,
           19121464-19122045,19122056-19122271,19122372-19122497,
           19126152-19126190,19126266-19126360,19126423-19126962,
           19127102-19127327,19127385-19127437,19127534-19127701,
           19128353-19128707,19128785-19128876,19129891-19129993
          Length = 1717

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 63  CFLFVYIXNKILTIISKCVLCC-CEETIDNVIV 158
           C+    + ++ L+   +CVLC  CEETID+++V
Sbjct: 731 CWTTYRLRSRGLSHPDRCVLCDQCEETIDHLLV 763


>06_01_0584 -
           4178391-4178732,4178854-4178915,4180361-4180481,
           4180592-4180732,4180830-4180959,4182306-4182436,
           4182528-4182601,4182680-4182741,4183135-4183209,
           4184658-4184760,4184835-4184991,4185549-4185743,
           4186204-4186282,4186697-4186806,4187249-4187374,
           4187475-4187541,4187622-4187791,4187880-4188018,
           4188361-4188522,4188672-4188772,4188852-4188994,
           4189438-4189537,4190364-4190414,4191062-4191169,
           4191279-4191494,4191585-4191721,4191820-4191915,
           4192017-4192234,4192764-4192925,4193006-4193163,
           4194221-4194379
          Length = 1364

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 160 INQDXMILTWTRWLLVLSSCRGSHFDSGSDKNLLVDLKENVTVHLEAINGTPI 318
           IN D  +L    W  ++      H     D  L   LKE  T H   + GTP+
Sbjct: 367 INMDSTVLKTIEWECMIVD--EGHRLKNKDSKLFGQLKEYHTKHRVLLTGTPV 417


>01_06_0318 - 28434817-28435197,28435333-28435461
          Length = 169

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/16 (68%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
 Frame = +3

Query: 114 CVLCC-CEETIDNVIV 158
           CVLC  CEETID+++V
Sbjct: 109 CVLCDQCEETIDHLLV 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,287,237
Number of Sequences: 37544
Number of extensions: 109012
Number of successful extensions: 190
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)