Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c14
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    28   1.6  
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     26   1.7  
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)                      25   3.9  
SB_8563| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  

>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 68  SVCLYT*QNPDNNFKVCIVLL 130
           S CL+  QNP NN ++ I+LL
Sbjct: 789 SACLFKLQNPQNNLRLVILLL 809


>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 25.8 bits (54), Expect(2) = 1.7
 Identities = 7/33 (21%), Positives = 16/33 (48%)
 Frame = +3

Query: 30  RFNEVIVCNEICFLFVYIXNKILTIISKCVLCC 128
           R    + C  +C +  ++ + +   + +CV CC
Sbjct: 87  RVMRCVACRVMCCVACFVMHCVACCVMRCVACC 119



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 105 ISKCVLCCCEETIDNVIV 158
           + +CV CC    +D  +V
Sbjct: 152 VMRCVACCVMRCVDCCVV 169


>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
          Length = 138

 Score = 24.6 bits (51), Expect(2) = 3.9
 Identities = 7/33 (21%), Positives = 16/33 (48%)
 Frame = +3

Query: 30  RFNEVIVCNEICFLFVYIXNKILTIISKCVLCC 128
           R    + C  +C +  ++ + +   + +CV CC
Sbjct: 7   RVMRCVGCRVMCCVACFVMHCVACCVMRCVACC 39



 Score = 21.0 bits (42), Expect(2) = 3.9
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +3

Query: 105 ISKCVLCCCEETIDNVIV 158
           + +CV CC    +D  +V
Sbjct: 72  VMRCVACCVMRCVDCCVV 89


>SB_8563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 147 CRLFLHSSTIHTLKLLSGFCXVYKQTE 67
           C   L S+ +  L LLS FC  Y Q+E
Sbjct: 3   CTKMLLSAAVIVLVLLSSFCATYGQSE 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,989,235
Number of Sequences: 59808
Number of extensions: 142430
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)