BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c14 (332 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68303-7|CAA92642.2| 445|Caenorhabditis elegans Hypothetical pr... 27 4.3 L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 27 4.3 AF435979-1|AAM46663.1| 445|Caenorhabditis elegans equilibrative... 27 4.3 Z79601-5|CAB01882.1| 450|Caenorhabditis elegans Hypothetical pr... 25 10.0 >Z68303-7|CAA92642.2| 445|Caenorhabditis elegans Hypothetical protein ZK809.4 protein. Length = 445 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +1 Query: 31 VLMRLLYVMKFVFCLFIYXTKS 96 V +RLLY+ F+FC ++ T+S Sbjct: 351 VYLRLLYIPFFIFCNYLPETRS 372 >L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related protein 1 protein. Length = 1845 Score = 26.6 bits (56), Expect = 4.3 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 202 LVLSSCRGSHFDSGSDKNLLVDLKENVTVHLEAINGTP 315 + L +CR H + D NLL +E++ LE I+ P Sbjct: 574 VALEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEEP 611 >AF435979-1|AAM46663.1| 445|Caenorhabditis elegans equilibrative nucleoside transporter1 protein. Length = 445 Score = 26.6 bits (56), Expect = 4.3 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +1 Query: 31 VLMRLLYVMKFVFCLFIYXTKS 96 V +RLLY+ F+FC ++ T+S Sbjct: 351 VYLRLLYIPFFIFCNYLPETRS 372 >Z79601-5|CAB01882.1| 450|Caenorhabditis elegans Hypothetical protein K09A9.3 protein. Length = 450 Score = 25.4 bits (53), Expect = 10.0 Identities = 9/22 (40%), Positives = 16/22 (72%) Frame = +1 Query: 31 VLMRLLYVMKFVFCLFIYXTKS 96 V +RLLY+ F+FC ++ T++ Sbjct: 356 VYLRLLYIPFFIFCNYLPETRT 377 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,823,765 Number of Sequences: 27780 Number of extensions: 112504 Number of successful extensions: 276 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 276 length of database: 12,740,198 effective HSP length: 72 effective length of database: 10,740,038 effective search space used: 408121444 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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