Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c14
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68303-7|CAA92642.2|  445|Caenorhabditis elegans Hypothetical pr...    27   4.3  
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...    27   4.3  
AF435979-1|AAM46663.1|  445|Caenorhabditis elegans equilibrative...    27   4.3  
Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>Z68303-7|CAA92642.2|  445|Caenorhabditis elegans Hypothetical
           protein ZK809.4 protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  VLMRLLYVMKFVFCLFIYXTKS 96
           V +RLLY+  F+FC ++  T+S
Sbjct: 351 VYLRLLYIPFFIFCNYLPETRS 372


>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
           protein 1 protein.
          Length = 1845

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 202 LVLSSCRGSHFDSGSDKNLLVDLKENVTVHLEAINGTP 315
           + L +CR  H +   D NLL   +E++   LE I+  P
Sbjct: 574 VALEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEEP 611


>AF435979-1|AAM46663.1|  445|Caenorhabditis elegans equilibrative
           nucleoside transporter1 protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  VLMRLLYVMKFVFCLFIYXTKS 96
           V +RLLY+  F+FC ++  T+S
Sbjct: 351 VYLRLLYIPFFIFCNYLPETRS 372


>Z79601-5|CAB01882.1|  450|Caenorhabditis elegans Hypothetical
           protein K09A9.3 protein.
          Length = 450

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 31  VLMRLLYVMKFVFCLFIYXTKS 96
           V +RLLY+  F+FC ++  T++
Sbjct: 356 VYLRLLYIPFFIFCNYLPETRT 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,823,765
Number of Sequences: 27780
Number of extensions: 112504
Number of successful extensions: 276
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)