BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c14 (332 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 27 3.1 At5g27010.1 68418.m03222 hypothetical protein 27 3.1 At4g02320.1 68417.m00316 pectinesterase family protein contains ... 26 7.2 At1g05720.1 68414.m00596 selenoprotein family protein contains P... 25 9.5 >At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 671 Score = 27.1 bits (57), Expect = 3.1 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +1 Query: 199 LLVLSSCRGSHFDSGSDKNLLVDLKENVTVHLEAINGTPIY 321 LL + + + F ++LL ++ VT+HLEA G PIY Sbjct: 520 LLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEA--GKPIY 558 >At5g27010.1 68418.m03222 hypothetical protein Length = 863 Score = 27.1 bits (57), Expect = 3.1 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +3 Query: 60 ICFLFVYIXNKILTIISKCVL-CCCEETIDNVIVYK 164 +CFL+ +I + + + K ++ CC E ++ ++Y+ Sbjct: 559 LCFLYYFIIDNFSSPMLKAIVSCCLYEQLEPAVLYR 594 >At4g02320.1 68417.m00316 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase Length = 518 Score = 25.8 bits (54), Expect = 7.2 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +1 Query: 238 SGSDKNLLVDLKENVTVHL-EAINGTPIYRLI 330 SGSD+NLL D + V+L A NGT Y I Sbjct: 190 SGSDRNLLQDPVDETKVNLVVAQNGTGNYTTI 221 >At1g05720.1 68414.m00596 selenoprotein family protein contains Prosite PS00190: Cytochrome c family heme-binding site signature; similar to 15 kDa selenoprotein (GI:12314088) {Homo sapiens} Length = 163 Score = 25.4 bits (53), Expect = 9.5 Identities = 10/40 (25%), Positives = 25/40 (62%) Frame = +3 Query: 33 FNEVIVCNEICFLFVYIXNKILTIISKCVLCCCEETIDNV 152 F+ + +C++ L Y+ ++ L +S C+ CC +++ D++ Sbjct: 40 FSGLALCSDCHSLSEYVKDQEL--VSDCLKCCADDSEDSM 77 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,232,818 Number of Sequences: 28952 Number of extensions: 97733 Number of successful extensions: 201 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 201 length of database: 12,070,560 effective HSP length: 71 effective length of database: 10,014,968 effective search space used: 390583752 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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