Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c14
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    27   3.1  
At5g27010.1 68418.m03222 hypothetical protein                          27   3.1  
At4g02320.1 68417.m00316 pectinesterase family protein contains ...    26   7.2  
At1g05720.1 68414.m00596 selenoprotein family protein contains P...    25   9.5  

>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 199 LLVLSSCRGSHFDSGSDKNLLVDLKENVTVHLEAINGTPIY 321
           LL  +  + + F     ++LL  ++  VT+HLEA  G PIY
Sbjct: 520 LLAKALAKTAGFTEIKKRSLLTSMENYVTLHLEA--GKPIY 558


>At5g27010.1 68418.m03222 hypothetical protein
          Length = 863

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 60  ICFLFVYIXNKILTIISKCVL-CCCEETIDNVIVYK 164
           +CFL+ +I +   + + K ++ CC  E ++  ++Y+
Sbjct: 559 LCFLYYFIIDNFSSPMLKAIVSCCLYEQLEPAVLYR 594


>At4g02320.1 68417.m00316 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 238 SGSDKNLLVDLKENVTVHL-EAINGTPIYRLI 330
           SGSD+NLL D  +   V+L  A NGT  Y  I
Sbjct: 190 SGSDRNLLQDPVDETKVNLVVAQNGTGNYTTI 221


>At1g05720.1 68414.m00596 selenoprotein family protein contains
           Prosite PS00190: Cytochrome c family heme-binding site
           signature; similar to 15 kDa selenoprotein (GI:12314088)
           {Homo sapiens}
          Length = 163

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/40 (25%), Positives = 25/40 (62%)
 Frame = +3

Query: 33  FNEVIVCNEICFLFVYIXNKILTIISKCVLCCCEETIDNV 152
           F+ + +C++   L  Y+ ++ L  +S C+ CC +++ D++
Sbjct: 40  FSGLALCSDCHSLSEYVKDQEL--VSDCLKCCADDSEDSM 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,232,818
Number of Sequences: 28952
Number of extensions: 97733
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)