Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c13
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   6.6  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   6.6  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    25   8.7  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.7  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   8.7  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 667 EDSDEALIYDKPAAVYPQSSLY 732
           +D D   +YDKP    P S+LY
Sbjct: 463 QDEDSYNVYDKPWRAAPSSTLY 484


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 579 FKSYPEANWGSWLCVQICCVLMWNHFGTNA 490
           FK + E N  +W+ + +  V++ N FG  A
Sbjct: 181 FKFWTEINSAAWISIFLAVVIVINLFGVRA 210


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 548 VGSVYRYVAS*CGTTSEPMPGFLKIYMLCTT 456
           VG+ + +V S C     P  GFL  Y+L TT
Sbjct: 157 VGTGFSFVWSACVAILFPFVGFLVTYVLSTT 187


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 234 FLCCRERCSLLYVWQV 187
           FLCC     LLY+W +
Sbjct: 551 FLCCIVSTGLLYIWNI 566


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +2

Query: 302 PSTPMEILQSNRRFH*TRSVTHCISYIRFSDVTRIVNA*RAFAKSLALSSRLWCKACIFL 481
           PST +++L S R      +  + IS I  + V +     +     L+ + R+   AC   
Sbjct: 322 PSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSNNFRILVAACDTF 381

Query: 482 RTLALVPKWFHIKTQHICTQSQLPQLASG 568
           R+ A+     H+K       S +   A G
Sbjct: 382 RSGAIEQLGVHVKNLQSLKGSSIELFAQG 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,689
Number of Sequences: 5004
Number of extensions: 64397
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)