Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c13
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family...   174   6e-44
At1g22090.1 68414.m02762 expressed protein contains Pfam profile...    31   1.1  
At1g63240.1 68414.m07148 expressed protein                             29   3.3  
At5g01540.1 68418.m00069 lectin protein kinase, putative similar...    28   5.7  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    28   5.7  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    28   5.7  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    28   5.7  
At5g39500.1 68418.m04783 pattern formation protein, putative sim...    28   7.6  
At5g23910.1 68418.m02808 kinesin motor protein-related                 28   7.6  
At3g19870.1 68416.m02516 expressed protein                             27   10.0 
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta...    27   10.0 

>At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family
           protein contains Pfam profile PF05721: Phytanoyl-CoA
           dioxygenase (PhyH); weak similarity to Phytanoyl-CoA
           dioxygenase, peroxisomal precursor (EC 1.14.11.18)
           (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid
           oxidase) (Swiss-Prot:O14832) [Homo sapiens]
          Length = 283

 Score =  174 bits (423), Expect = 6e-44
 Identities = 89/208 (42%), Positives = 118/208 (56%), Gaps = 2/208 (0%)
 Frame = +1

Query: 103 TDGYAILEDFLHVAECDEIKAAGLEFTE--NLPDIEERATFSTTEKTHLKDKYFLESNDK 276
           + GY ++E F   A  DEI+       E  N  D    + FST  + H  D YF ES +K
Sbjct: 17  SQGYLVIESF---ASEDEIRGLRKRMDELLNQFDCSVSSIFSTKNQKHTTDNYFFESAEK 73

Query: 277 IRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYSERVKSICKELGFIEPA 456
           I  FFEE A   DG L    ++S+NKVGHALH L P+++ +TYS +  S+   LG+  P 
Sbjct: 74  ISFFFEEKAFGDDGKLKQPKQLSINKVGHALHELDPLYKDFTYSSKFSSLASSLGYRRPV 133

Query: 457 VVQSMYIFKNPGIGSEVVPHQDATYLYTEPTPPVGFWIALEEATVQNGCLWLXXXXXXXX 636
           V+QSMYIFK PGIG EVVPHQD +++YT+P    G WIALE++T+ NGCLW         
Sbjct: 134 VMQSMYIFKQPGIGGEVVPHQDNSFVYTDPQSCTGLWIALEDSTLVNGCLWAIPGSHKNG 193

Query: 637 XXXXLIRNPDEDSDEALIYDKPAAVYPQ 720
                IR      D  + +D+P+  Y Q
Sbjct: 194 LVRRFIR-----GDNGITFDQPSPSYEQ 216


>At1g22090.1 68414.m02762 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 329

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 184 ENLPDIEERATFSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTV 330
           + LPD      F  T++ HL  +  L  ND IR + E   +  D  LTV
Sbjct: 152 DELPDWPSEIAFDDTKRFHLVKESELRDNDWIRLYLELTLVAHDRFLTV 200


>At1g63240.1 68414.m07148 expressed protein
          Length = 548

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +1

Query: 127 DFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLESNDKIRCFFEEGAI 306
           +  +  E DE   +  E+ EN+ +       ST  ++  +    LES  K +C FE+  +
Sbjct: 152 EITYAIEEDEEDFSEREYVENVENFSNIT--STPLRSQPERMQKLESRAKTQCVFEDEDL 209

Query: 307 DADGNLTVEPEISLNKVGHAL 369
            +D +  + PE   +K G+ L
Sbjct: 210 SSDSDNKL-PEAETSKEGNGL 229


>At5g01540.1 68418.m00069 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 682

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +1

Query: 169 GLEFTENLPDIEERATFSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTVEP 336
           GL +     D++E   +   +  + K+ + LES + I+   E        N+TV P
Sbjct: 171 GLNYNSRTSDLQEPVVYYNNDDHNKKEDFQLESGNPIQALLEYDGATQMLNVTVYP 226


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 301 AIDADGNLTVEPEISLNKVGHAL 369
           AIDADG L   P I  NK G  L
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLL 656


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 301 AIDADGNLTVEPEISLNKVGHAL 369
           AIDADG L   P I  NK G  L
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLL 656


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 234 NTFKG*IFPRKQRQDKV----FLRRGSHRRRWKSYSRTGDFIKQGRSR 365
           +TF   +FP K     +    + RRG H R++   S TG+F+++ R+R
Sbjct: 332 STFVHAMFPGKNANRSLTWTDWSRRGPHPRKYTRRSVTGEFLRRVRNR 379


>At5g39500.1 68418.m04783 pattern formation protein, putative
           similar to SP|Q42510 Pattern formation protein EMB30
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1443

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 649 NVCALL-TCESLETATDSRFELWLLQELSRSQLGELALCTDMLRLDVEPLRNQCQ 488
           ++C ++ TC  +   + S+ EL  LQ ++R  + EL  C       + PL N+C+
Sbjct: 183 DICTIVNTCLRVVHQSSSKSEL--LQRIARHTMHELIRCIFSQLPFISPLANECE 235


>At5g23910.1 68418.m02808 kinesin motor protein-related 
          Length = 665

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 196 DIEERATFSTTEKTHLKD-KYFLESNDKIRCFFEEGAIDADGNLTVEPEISLNKV 357
           ++ ER T   T  + +K  K F E+ND ++C      ++    + ++  IS +KV
Sbjct: 289 NVTERKTKINTATSAIKARKLFGEANDSVKCKNSSKKVEGKAKMVLKKGISTSKV 343


>At3g19870.1 68416.m02516 expressed protein 
          Length = 1117

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 103 TDGYAILEDFLHVAECDEIKAAGLEFTENLPDIEERATFSTTEKTHLKDKYFLESNDKIR 282
           TDGY+I+E+ + V   DE++  G +  + LP  E R   S      + D    E  +++R
Sbjct: 703 TDGYSIIENKIQV---DEVEPDGSQELQILP--EARRIESGKPTLRVMDSKIAEILERLR 757

Query: 283 CFF 291
            +F
Sbjct: 758 RYF 760


>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
           putative similar to zinc finger and C2 domain protein
           GI:9957238 from [Arabidopsis thaliana];contains Pfam
           profile: PF01412 Putative GTP-ase activating protein for
           Arf
          Length = 385

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 467 ACIFLRTLALVPKWFHIKTQHICTQSQLPQLASG*LLKKPQFK-TAVCGCLE 619
           AC++    +  PKW  ++ + + T S  P+     LLK+P  K  A CG  E
Sbjct: 18  ACLYELLCSETPKWTPLRVEDLQTSSSDPRDRLEKLLKQPGNKYCADCGSPE 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,462,065
Number of Sequences: 28952
Number of extensions: 343848
Number of successful extensions: 980
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)