Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c11
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.81 
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   1.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   1.9  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   7.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.6  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +1

Query: 409 CPICYNDH*EERCGAKGQH*NQK*GSLCDVTQCGS-QKRTGHVCLH 543
           CP C      ER G  G H  +K    C +  CG    +T H+  H
Sbjct: 293 CPNCQE---AERLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAH 335


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +3

Query: 336 YSNTSVLLLTSKWWTLTQRWTMMMMS 413
           + +   ++++  W T+ + W+ M MS
Sbjct: 127 FGSIQFIIISKHWVTIMKEWSFMEMS 152


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 321 PMHSGPIPPPGSM 283
           P+ S P PPPGS+
Sbjct: 207 PVPSTPYPPPGSL 219


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 110 VRLLTKLKVLPDVRGSVNLSSKAAPATLSDFDVQHKTPVIRKQKLIP 250
           +R L  L  L +   S + SS  +P+T  D       P     ++IP
Sbjct: 111 IRSLEDLLALDESTVSSSTSSIPSPSTTDDLSTNPTPPPHYTYQIIP 157


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 563 GKIYSSVCKHTC 528
           GK+ +S+CK+ C
Sbjct: 519 GKVETSICKNFC 530


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 473 KSEAAYVTSRNVALRNELDMYAYILN 550
           +SEA+ V      LR++ D+   +LN
Sbjct: 261 RSEASKVVKNAQKLRHKFDLKTLVLN 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,789
Number of Sequences: 336
Number of extensions: 3208
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)