Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c11
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    93   3e-20
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    58   1e-09
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    33   0.040
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   3.5  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   6.1  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   6.1  
SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    25   8.0  

>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
 Frame = +2

Query: 224 VIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDND 403
           ++RK       +YGG++ VT++PG GIG E    V +IFK    PI+FE +D+     N+
Sbjct: 5   LVRKSSAFQPLKYGGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNN 64

Query: 404 ----DDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
               D +  AI ++KRN VGLKG + T  E    TS NVALR ELD+YA ++  K+ P
Sbjct: 65  KSSGDALHEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELDIYASLVLIKNIP 122


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = +2

Query: 266 GRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDV--QYAITTIKR 439
           G + VTM+ G GIGPE    V  IFK    PI++E V + P + N        A  ++++
Sbjct: 44  GNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIPDDAKESVRK 103

Query: 440 NGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKS 559
           N V LKG + T     +V S N+ LR    ++A +  C S
Sbjct: 104 NKVALKGPLATPIGKGHV-SMNLTLRRTFGLFANVRPCVS 142


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 32.7 bits (71), Expect = 0.040
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 392 MDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYI 544
           M +DD VQY I  +K  G+ L  +++T  E   +  +    R + D+Y Y+
Sbjct: 685 MKHDDLVQYVINNVKDRGIPLVSDVKTAIEK--LLEKEYLEREDNDIYTYV 733


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 411 TSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPPGSMVTA 274
           TS + SI+ ++  T+ S  +P     S   P    P+PPP +  TA
Sbjct: 816 TSQASSILPTVPRTT-SYTSPYATTSSHITPADVHPLPPPSTSTTA 860


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 474 LVSMLPFSPTPFLLMVV----IAYWTSSSLSIVGSMSTT 370
           L  ML   P+PF ++      + YW  SSL+I+G + ++
Sbjct: 38  LTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSS 76


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 436 LNGRYSILDIIIIVHRWVNVHHFEVNRSTDVFEY 335
           L+G+ S  ++I+ + +W +VH  +V R   +  Y
Sbjct: 356 LDGKSSKQELIMALQQWASVHGRQVTRPVLIASY 389


>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 230 RKQKLIPKAQ-YGGRHAVTMLPGGGIGPECM 319
           R  K IP A  +  ++ + ++PGGG+G + +
Sbjct: 56  RSYKEIPSADDFAKQYDIAIIPGGGLGAKTL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,568
Number of Sequences: 5004
Number of extensions: 50428
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)