Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c11
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0066 - 12026714-12027211,12027783-12028103                       32   0.38 
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722...    29   2.0  
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626...    29   2.0  
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593...    28   4.7  
08_02_1627 - 28348225-28348725,28349061-28349114,28352613-283528...    28   4.7  
11_06_0087 - 19919224-19922304                                         28   6.2  
10_08_0989 + 22069244-22071679                                         27   8.2  
09_02_0181 - 5425833-5426527,5426667-5429397                           27   8.2  

>09_03_0066 - 12026714-12027211,12027783-12028103
          Length = 272

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 272 HAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDN--DDDVQYAITT--IKR 439
           HAVT L  GG G +    + D+    G     EV  I     N  DD+VQYAIT   +  
Sbjct: 42  HAVTKLVVGGGGVDSARNITDVDG--GDICHREVHSITEEDGNVDDDEVQYAITNEGVGA 99

Query: 440 NGVGLKGNIETKSEAAYVTS 499
           +  G  G + + SE  Y  S
Sbjct: 100 DDDGSDGKLSSASEVLYAAS 119


>08_02_1399 +
           26771106-26771171,26772004-26772111,26772218-26772280,
           26772382-26772468,26772931-26773056,26773418-26773551,
           26773627-26773699,26773819-26773884,26774358-26774391,
           26774904-26774953,26775067-26775191,26775278-26775392,
           26775617-26775685
          Length = 371

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 290 PGGGIGPE-CMGYVRDIFKYIGAPID 364
           P  G+G E CM  V D F+Y+ AP++
Sbjct: 302 PQHGVGAEICMSVVEDSFEYLDAPVE 327


>08_01_0709 +
           6265949-6266452,6267697-6267786,6268257-6268402,
           6268534-6268710,6268774-6268840,6268949-6269056,
           6269718-6269732
          Length = 368

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 462 LPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAP-MYLNMSRTYPMHSGPIPPP 292
           L  SP P  L V+     SSS +   + S+ S S  AP    + S      SGP PPP
Sbjct: 14  LTLSPIPTALRVLSTASASSSSASAAASSSDSDSAAAPDADFDSSEFALPPSGPTPPP 71


>09_04_0686 +
           19457832-19457870,19458021-19458107,19459311-19459391,
           19459463-19459489,19459589-19459651,19459768-19459854,
           19460290-19460415,19460827-19460960,19461037-19461109,
           19461307-19461372,19461778-19461816,19461927-19462051,
           19462131-19462245,19463109-19463141,19463525-19463593
          Length = 387

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 290 PGGGIGPE-CMGYVRDIFKYIGAPID 364
           P  GIG E CM  V + F+Y+ AP++
Sbjct: 307 PQHGIGAEICMSVVEESFEYLDAPVE 332


>08_02_1627 -
           28348225-28348725,28349061-28349114,28352613-28352810,
           28352856-28353380
          Length = 425

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 426 VIAYWTSSSLSIVGSMSTTSKSIGAPMY 343
           +  YWT+SS   +G+  +   S+G P Y
Sbjct: 254 LFTYWTTSSRIAIGASISPVSSVGGPQY 281


>11_06_0087 - 19919224-19922304
          Length = 1026

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 396 SIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPP 292
           ++VG++S    S+    +L++SR Y   S P PPP
Sbjct: 104 ALVGAISPALLSLRRLRHLDLSRNYLQGSPPGPPP 138


>10_08_0989 + 22069244-22071679
          Length = 811

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 496 RHIGCLTFGFNVAL*PHTVPLNGRYSILDIIIIVHRWVNVHH-FEVNRSTDVFEYVANVS 320
           +H+G +T   N A   + + ++G  SI ++I+ V     +H+   +  S     Y+ N  
Sbjct: 168 KHVGGITSAHNKAQEKYNLFVSGGPSIDNVIVKVSNESEIHYKARLTYSLRCLRYLLNQG 227

Query: 319 HALRTDTASREHGHR 275
            A R    S E  +R
Sbjct: 228 LAFRGHDESEESSNR 242


>09_02_0181 - 5425833-5426527,5426667-5429397
          Length = 1141

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 356 PIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKG 460
           P+    +  D  MDND++++ A+  IK + VG+ G
Sbjct: 140 PVQKIPIPCDHVMDNDNNLREALDYIKNDPVGIIG 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,641
Number of Sequences: 37544
Number of extensions: 367308
Number of successful extensions: 1035
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)