Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c11
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_38115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +2

Query: 254 AQYGGRHAVTMLPGGGIGPECMGYVRDIFK 343
           A +GGRH VT++PG G+GPE +  V+ +FK
Sbjct: 60  APFGGRHTVTLIPGDGVGPELVNCVKQMFK 89


>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -1

Query: 441 FLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPPGSMVTA*RPP 262
           F+L+VV   +         S      + G P +   +  YP      PPPGS V    PP
Sbjct: 98  FVLLVVSMCYCKHCQKANRSPGHVGGTAGTPSFATTTINYPPPGPQAPPPGSTVHY-PPP 156

Query: 261 YCALG 247
              +G
Sbjct: 157 QTTMG 161


>SB_38115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 245 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFE--VVDIDPTMDNDDDVQY 418
           I +  YG R    + P G I P C G +  IF    AP++ +  VVDI  ++   D V  
Sbjct: 296 IQQENYGCRVLDCLNPSGEIPPGCTGLIHWIF----APLEAKTYVVDIPVSIIGGDSVLV 351

Query: 419 AITTI 433
             T +
Sbjct: 352 TFTGV 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,102,655
Number of Sequences: 59808
Number of extensions: 416778
Number of successful extensions: 1080
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)