Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c11
         (579 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    26   1.0  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   3.1  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   3.1  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   9.5  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 463 VAL*PHTVPLNGRYSILDIIIIVHRWVNVHHFEV 362
           V L P T P N + +  + II V  W+  HH E+
Sbjct: 663 VLLVPGTTPDNVKAAAEEAIISVMEWMARHHLEL 696


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +2

Query: 29   NEFSTSCDYLTSFQSQTAVFS-----SKFRMAVRLLTKLKVLPDVRGSVNLSSKAAPA 187
            N +S  CDY+T FQ     +       K R A  + +   V+P  + +   +S+A+PA
Sbjct: 920  NAWSCECDYVTRFQEYLKTYDFVRDRHKIRCASYVSSNATVVPATQPAD--ASQASPA 975


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 463 VAL*PHTVPLNGRYSILDIIIIVHRWVNVHHFEV 362
           V L P T P        + +  V RW+  HH E+
Sbjct: 677 VLLAPGTTPAAAAVVAEEAVSAVDRWLREHHLEL 710


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 224 RESCAGHRNPIM*RALLSS*DSQTRAHQAK 135
           R+   GHR P    A +SS    T  HQA+
Sbjct: 419 RKRRTGHRPPAGMNASMSSGKRSTATHQAE 448


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,996
Number of Sequences: 2352
Number of extensions: 13905
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)