Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12c11
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical pr... 126 1e-29
AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical ... 115 3e-26
Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical pr... 65 4e-11
Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical pr... 60 8e-10
AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine r... 32 0.26
Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical pr... 31 0.78
AF068709-14|AAC19258.2| 312|Caenorhabditis elegans Serpentine r... 30 1.4
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 1.8
Z74033-9|CAN99687.1| 228|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z74033-8|CAA98470.1| 218|Caenorhabditis elegans Hypothetical pr... 28 4.2
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 4.2
AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical ... 28 5.5
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 27 9.6
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 27 9.6
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 27 9.6
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 27 9.6
AY028167-1|AAK19023.1| 287|Caenorhabditis elegans EFL-2 protein. 27 9.6
AL117203-19|CAN86631.1| 358|Caenorhabditis elegans Hypothetical... 27 9.6
AL117203-18|CAN86630.1| 332|Caenorhabditis elegans Hypothetical... 27 9.6
AL117203-17|CAN86629.1| 284|Caenorhabditis elegans Hypothetical... 27 9.6
AL117203-16|CAB60421.1| 412|Caenorhabditis elegans Hypothetical... 27 9.6
>Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical
protein F35G12.2 protein.
Length = 396
Score = 126 bits (304), Expect = 1e-29
Identities = 65/141 (46%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Frame = +2
Query: 146 VRGSVNLSSKAAPATLSDFDV-QHKTPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMG 322
+R S N+ KA AT + D+ + ++PV++ A+YGGRH VT+LPG GIGPE +
Sbjct: 10 LRSSKNVVQKAFVATSPNSDMLRFRSPVLQTNTT-KLARYGGRHNVTVLPGDGIGPEMLH 68
Query: 323 YVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSR 502
+V I + AP+DFEVV++ D +D+ AIT IKRNGV LKGNIETK + SR
Sbjct: 69 HVERILSAVQAPVDFEVVNLTSKEDASEDLAEAITAIKRNGVALKGNIETKFDNPSFVSR 128
Query: 503 NVALRNELDMYAYILNCKSYP 565
N+ LR +L++YA +L+C + P
Sbjct: 129 NLELRRQLNLYANVLHCSTIP 149
>AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical
protein C30F12.7 protein.
Length = 373
Score = 115 bits (276), Expect = 3e-26
Identities = 53/107 (49%), Positives = 74/107 (69%)
Frame = +2
Query: 245 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAI 424
+P A+YGGRH V LPG GIGPE + ++R+IF + AP++FE V + ++ D D+ A+
Sbjct: 27 LPLAKYGGRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDGDMDAAM 85
Query: 425 TTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
I+RNGV +KGNIETK + SRNV LR +LD+YA IL+C + P
Sbjct: 86 LAIERNGVAIKGNIETKHDDPQFNSRNVELRTKLDLYANILHCVTIP 132
>Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical
protein F43G9.1 protein.
Length = 358
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Frame = +2
Query: 263 GGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQY---AITTI 433
G VT++PG GIGPE V+ IF+ API ++ VD+ P D + I +
Sbjct: 22 GDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRDGVFRIPSRCIELM 81
Query: 434 KRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKS 559
N VGLKG +ET + S N+A+R E +YA + C+S
Sbjct: 82 HANKVGLKGPLETPIGKGH-RSLNLAVRKEFSLYANVRPCRS 122
>Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical
protein C37E2.1 protein.
Length = 379
Score = 60.5 bits (140), Expect = 8e-10
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +2
Query: 248 PKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPT-MDNDDDVQYAI 424
P + + VT++PG G+GPE + V+DI K G PI+FE + + ++ A+
Sbjct: 35 PPTELNQKLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYTRSSSIENAV 94
Query: 425 TTIKR-NGVGLKGNIETKS---EAAYVTSRNVALRNELDMYAYILNCKS 559
+I R N V LKG IE + + N+ LR LD++A +++ K+
Sbjct: 95 ESIGRNNNVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKT 143
>AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine
receptor, class h protein190 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 308 PECMGYVRDIFKYIGAPIDFEVVDI 382
PE GY IFKY AP+++ VV++
Sbjct: 79 PELAGYPLGIFKYFNAPVEYYVVEV 103
>Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical
protein C18D4.9 protein.
Length = 361
Score = 30.7 bits (66), Expect = 0.78
Identities = 27/122 (22%), Positives = 47/122 (38%)
Frame = -1
Query: 441 FLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPPGSMVTA*RPP 262
FL+M V+ S + I M T + + + ++ Y + MV RP
Sbjct: 218 FLIMNVLISLLSPIIYIPIMMKTRENRMYSQQHAHL-HNYVFWQSILVVSSKMVIKIRPK 276
Query: 261 YCALGISFCFLITGVLCWTSKSDNVAGAAFELRFTDPRTSGKTFNLVNKRTAILNFELKT 82
C + F + ++ T ++G + FT P ++ N+ NF+LKT
Sbjct: 277 LCLVTFCFKIALPYIIRNTKIQHIISGISINDGFTTPLIIQLSYLWCNRHILFKNFKLKT 336
Query: 81 AV 76
V
Sbjct: 337 FV 338
>AF068709-14|AAC19258.2| 312|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 61 protein.
Length = 312
Score = 29.9 bits (64), Expect = 1.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 252 LGISFCFLITGVLCWT 205
+ +++CFL G+LCWT
Sbjct: 228 IALTYCFLYAGILCWT 243
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.5 bits (63), Expect = 1.8
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = -1
Query: 528 SSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAP 349
SS+ + T+ T S L L SPTP +V++ +S S S V + + T + G P
Sbjct: 434 SSTIVSTTITPSTPKVSTLT--LSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVP 491
Query: 348 MYLNMSRTYPMHSGPIPPPGSMVTA 274
+ T P S P P S VTA
Sbjct: 492 TSTSNQPT-PSTSNPTTPK-STVTA 514
>Z74033-9|CAN99687.1| 228|Caenorhabditis elegans Hypothetical
protein F38B7.2b protein.
Length = 228
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/91 (24%), Positives = 32/91 (35%)
Frame = -1
Query: 531 MSSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGA 352
M S F R + F P FLL+ + +W + + M +
Sbjct: 119 MKSLFYRCHFAQTCMGLECKIDSRLFVPPIFLLIFISIFWCFKRM-LRRDMKRVERQTSF 177
Query: 351 PMYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 259
+ M T P H P PP + +A PPY
Sbjct: 178 HI---MDPTNPAHRSPPPPYNAQNSAIPPPY 205
>Z74033-8|CAA98470.1| 218|Caenorhabditis elegans Hypothetical
protein F38B7.2a protein.
Length = 218
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/91 (24%), Positives = 32/91 (35%)
Frame = -1
Query: 531 MSSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGA 352
M S F R + F P FLL+ + +W + + M +
Sbjct: 109 MKSLFYRCHFAQTCMGLECKIDSRLFVPPIFLLIFISIFWCFKRM-LRRDMKRVERQTSF 167
Query: 351 PMYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 259
+ M T P H P PP + +A PPY
Sbjct: 168 HI---MDPTNPAHRSPPPPYNAQNSAIPPPY 195
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -1
Query: 402 SLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPI-PPPGSMVTA*RPPYCALGIS 241
++ I GS+ +++ S P Y + S + S P+ PPP T P Y A IS
Sbjct: 138 NMHIGGSVMSSNSSTATPSYQSNSTSSYSSSAPVAPPPVPRHTQSIPSYSAPAIS 192
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 272 HAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQ-YAITTIKR 439
H +L G G V+ + IG +D VV++ PT D+D+ +Q Y TTI R
Sbjct: 378 HNEPLLLVGETGVGKTSVVQAVADLIGVTLD--VVNVSPTSDSDELIQGYKPTTIGR 432
>AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical
protein Y37E11AL.2 protein.
Length = 215
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 442 VPLNGRYSILDIIIIVHRWVNVHHFEVNRSTDVFEYVANVSHALRTDTASREHGH 278
VP G + + + + W+N+H + RS VANV + +R HGH
Sbjct: 59 VPAVGSVLSVLLSLFTYEWLNLHFSSMTRSRRACFDVANVLETYQ--PRARTHGH 111
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 492 T*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMH 313
T AA+ + LP S PF VV+ + ++ + + +S GAP + T+P
Sbjct: 147 TSAATNIYQGLPSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFS 206
Query: 312 SGPI 301
+ I
Sbjct: 207 TTSI 210
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 492 T*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMH 313
T AA+ + LP S PF VV+ + ++ + + +S GAP + T+P
Sbjct: 185 TSAATNIYQGLPSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFS 244
Query: 312 SGPI 301
+ I
Sbjct: 245 TTSI 248
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 492 T*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMH 313
T AA+ + LP S PF VV+ + ++ + + +S GAP + T+P
Sbjct: 185 TSAATNIYQGLPSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFS 244
Query: 312 SGPI 301
+ I
Sbjct: 245 TTSI 248
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 492 T*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMH 313
T AA+ + LP S PF VV+ + ++ + + +S GAP + T+P
Sbjct: 147 TSAATNIYQGLPSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAPPPFQYNMTHPFS 206
Query: 312 SGPI 301
+ I
Sbjct: 207 TTSI 210
>AY028167-1|AAK19023.1| 287|Caenorhabditis elegans EFL-2 protein.
Length = 287
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 201 KSDNVAGAAFELRFTDPRTSGKTFNLVNKRTAILNFEL 88
KS+ ++FE++ TDP TSG +V + + + L
Sbjct: 172 KSELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHAL 209
>AL117203-19|CAN86631.1| 358|Caenorhabditis elegans Hypothetical
protein Y48C3A.17d protein.
Length = 358
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 201 KSDNVAGAAFELRFTDPRTSGKTFNLVNKRTAILNFEL 88
KS+ ++FE++ TDP TSG +V + + + L
Sbjct: 169 KSELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHAL 206
>AL117203-18|CAN86630.1| 332|Caenorhabditis elegans Hypothetical
protein Y48C3A.17c protein.
Length = 332
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 201 KSDNVAGAAFELRFTDPRTSGKTFNLVNKRTAILNFEL 88
KS+ ++FE++ TDP TSG +V + + + L
Sbjct: 169 KSELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHAL 206
>AL117203-17|CAN86629.1| 284|Caenorhabditis elegans Hypothetical
protein Y48C3A.17b protein.
Length = 284
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 201 KSDNVAGAAFELRFTDPRTSGKTFNLVNKRTAILNFEL 88
KS+ ++FE++ TDP TSG +V + + + L
Sbjct: 169 KSELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHAL 206
>AL117203-16|CAB60421.1| 412|Caenorhabditis elegans Hypothetical
protein Y48C3A.17a protein.
Length = 412
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 201 KSDNVAGAAFELRFTDPRTSGKTFNLVNKRTAILNFEL 88
KS+ ++FE++ TDP TSG +V + + + L
Sbjct: 169 KSELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHAL 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,877,350
Number of Sequences: 27780
Number of extensions: 301842
Number of successful extensions: 828
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -