Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12c11
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 69 3e-12
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 68 4e-12
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 64 5e-11
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 64 5e-11
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 60 1e-09
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 51 6e-07
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 33 0.10
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 31 0.42
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 31 0.73
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 30 1.3
At2g27280.1 68415.m03278 hypothetical protein 30 1.3
At1g17080.1 68414.m02079 expressed protein 30 1.3
At1g21540.1 68414.m02694 AMP-binding protein, putative strong si... 29 2.2
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 28 5.2
At4g18620.1 68417.m02757 hypothetical protein various predicted ... 28 5.2
At3g60030.1 68416.m06704 squamosa promoter-binding protein-like ... 27 6.8
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 6.8
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 6.8
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 27 9.0
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 27 9.0
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 27 9.0
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 68.5 bits (160), Expect = 3e-12
Identities = 40/116 (34%), Positives = 62/116 (53%)
Frame = +2
Query: 218 TPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMD 397
T + R +P+ G VT++PG GIGP G V + + + AP+ FE ++ M
Sbjct: 21 TSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFERYEVLGNMR 80
Query: 398 NDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
+ I ++KRN V LKG + T V+S N+ LR ELD++A ++NC + P
Sbjct: 81 KVP--EEVIESVKRNKVCLKGGLATPVGGG-VSSLNMQLRKELDIFASLVNCINVP 133
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 68.1 bits (159), Expect = 4e-12
Identities = 40/112 (35%), Positives = 60/112 (53%)
Frame = +2
Query: 230 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDD 409
R +P+ G AVT++PG GIGP V + + + API FE D+ M
Sbjct: 24 RSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIFFEKYDVHGEMSRVP- 82
Query: 410 VQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
+ +I++N V LKG ++T V+S NV LR ELD++A ++NC + P
Sbjct: 83 -PEVMESIRKNKVCLKGGLKTPVGGG-VSSLNVQLRKELDLFASLVNCFNLP 132
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 64.5 bits (150), Expect = 5e-11
Identities = 37/112 (33%), Positives = 62/112 (55%)
Frame = +2
Query: 230 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDD 409
R +P+ G VT++PG G+GP V+ + + + AP+ FE ++ M +
Sbjct: 24 RSVTYMPRPGDGKPRPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHGDMKSLP- 82
Query: 410 VQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
+ + +IK+N V LKG ++T V+S NV LR ELD++A ++NC + P
Sbjct: 83 -EGLLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLRKELDLFASLVNCFNLP 132
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 64.5 bits (150), Expect = 5e-11
Identities = 37/112 (33%), Positives = 62/112 (55%)
Frame = +2
Query: 230 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDD 409
R +P+ G VT++PG G+GP V+ + + + AP+ FE ++ M +
Sbjct: 24 RSVTYMPRPGDGKPRPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHGDMKSLP- 82
Query: 410 VQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
+ + +IK+N V LKG ++T V+S NV LR ELD++A ++NC + P
Sbjct: 83 -EGLLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLRKELDLFASLVNCFNLP 132
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +2
Query: 281 TMLPGGGIGPECMGYVRDIFKYIGAPIDFEV----VDIDPTMDNDDDVQYAITTIKRNGV 448
T+ PG GIGPE V+ +F G PI++E +IDP + + ++ +++RN V
Sbjct: 47 TLFPGDGIGPEIAESVKKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWE-SLESVRRNKV 105
Query: 449 GLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
GLKG + T + S N+ LR EL++YA + C S P
Sbjct: 106 GLKGPMATPIGKGH-RSLNLTLRKELNLYANVRPCYSLP 143
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 50.8 bits (116), Expect = 6e-07
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Frame = +2
Query: 281 TMLPGGGIGPECMGYVRDIFKYIGAPID----FEVVDIDPTMDNDDDVQYAITTIKRNGV 448
T+ PG GIGPE V+ +F ID F ++DP N + ++ +N V
Sbjct: 47 TLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDP-RTNSFLTWDNLQSVLKNKV 105
Query: 449 GLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYP 565
GLKG + T + S N+ LR EL++YA + C S P
Sbjct: 106 GLKGPMATPIGKGH-RSLNLTLRKELNLYANVRPCYSLP 143
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 33.5 bits (73), Expect = 0.10
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 161 NLSSKAAPATLSDFDVQHKTPV-IRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDI 337
N+ + PAT Q P +R P + R+ +T+LPG GIGPE + +++
Sbjct: 8 NIRTVKVPATFRAVSKQSLAPFRVRCAVASPGKK---RYTITLLPGDGIGPEVVSIAKNV 64
Query: 338 FKYIGA 355
+ G+
Sbjct: 65 LQQAGS 70
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 269 RHAVTMLPGGGIGPECMGYVRDIFKYIG 352
R+ +T+LPG GIGPE + +++ + G
Sbjct: 43 RYNITLLPGDGIGPEVISVAKNVLQKAG 70
>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
enzyme, putative similar to isoamylase from [Solanum
tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
[Hordeum vulgare] GI:21314275, [Oryza sativa]
GI:3252794; contains Pfam profiles PF00128: Alpha
amylase catalytic domain, PF02922: Isoamylase N-terminal
domain
Length = 783
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 203 DVQHKTPVIRKQKLIPKA-QYGGRHAVTMLPGGGIGPECMGYVRDIFK 343
D+ P++R KLI +A GG + V M P GI E G RD+ +
Sbjct: 450 DMISNDPILRGVKLIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVR 497
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 269 RHAVTMLPGGGIGPECMGYVRDIFKYIGA 355
R+ + +LPG GIGPE + +++ + G+
Sbjct: 46 RYNIALLPGDGIGPEVISVAKNVLQKAGS 74
>At2g27280.1 68415.m03278 hypothetical protein
Length = 427
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 349 DVFEYVANVSHALRTDTASREHGHRVTTAVLRLR 248
+V +++ S+ LR DTA +E VTTA RLR
Sbjct: 26 NVLDFIGKESNFLRKDTAEKEITDAVTTAKERLR 59
>At1g17080.1 68414.m02079 expressed protein
Length = 154
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 357 GAPMYLNMSRTYPMHSGPIPPPGSMVTA*RPPYCALGISFCFLITG 220
GAP Y + +T P+H G G V R P C +G+ + I G
Sbjct: 57 GAPYYAHGYQTVPVHGG--VAEGRPVRQRRLPCCGIGLGWFLFIVG 100
>At1g21540.1 68414.m02694 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 9 AMPBP9 (AMPBP9) GI:20799726
Length = 550
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 354 APMYLNMSRTYPMHSGPIPPPGSMVTA*RPPYCAL 250
APM LNM YP P+ P ++TA PP A+
Sbjct: 282 APMVLNMLTNYPSRK-PLKNPVQVMTAGAPPPAAI 315
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 306 PIPPPGSMVTA*RPPYCAL-GISFCF 232
P+PPP + PP CAL GI CF
Sbjct: 99 PLPPPPLIFVGAPPPTCALKGIVCCF 124
>At4g18620.1 68417.m02757 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 164
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 293 GGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDV 412
GGG G E G VRD+ G P DF ++ +D++ V
Sbjct: 51 GGGKGGEGKGSVRDVTLVSGFPADFSTERLE-ELDDESHV 89
>At3g60030.1 68416.m06704 squamosa promoter-binding protein-like 12
(SPL12) identical to squamosa promoter binding
protein-like 12 [Arabidopsis thaliana] GI:6006395;
contains Pfam profiles PF03110: SBP domain, PF00023:
Ankyrin repeat
Length = 927
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 259 LRLRNQLLFPDNGSLVLDIEIR*CSGRCFRAEIHRPAHIRQNLQFS 122
LR++NQL F NG +VLD + S + RP + + QF+
Sbjct: 488 LRVQNQLAFAFNGQVVLDTSLPLRSHDYSQIITVRPLAVTKKAQFT 533
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -1
Query: 459 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPMY---LNMSRTYPMHSGPIPPP 292
PF PTP + +A W SS S+ ++S ++GAP L RT P +S P
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPS 297
Query: 291 G 289
G
Sbjct: 298 G 298
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -1
Query: 459 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPMY---LNMSRTYPMHSGPIPPP 292
PF PTP + +A W SS S+ ++S ++GAP L RT P +S P
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPS 297
Query: 291 G 289
G
Sbjct: 298 G 298
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 351 PMYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 259
P Y S +P+ S P+PPP S ++ PP+
Sbjct: 9 PYYSPPSHQHPLPS-PVPPPPSHISPPPPPF 38
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 375 TTSKSIGAPMYLNMSRTYPMHSGPIPPPGS 286
T S+S G P N RTY S P+ P S
Sbjct: 158 TESRSDGTPSEANSPRTYTRRSSPLHSPFS 187
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 375 TTSKSIGAPMYLNMSRTYPMHSGPIPPPGS 286
T S+S G P N RTY S P+ P S
Sbjct: 125 TESRSDGTPSEANSPRTYTRRSSPLHSPFS 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,415
Number of Sequences: 28952
Number of extensions: 279010
Number of successful extensions: 757
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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