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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c10
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...   242   3e-65
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    66   3e-12
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    45   1e-05
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    40   4e-04
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.18 
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    29   0.41 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.71 
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    27   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   5.0  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   5.0  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.8  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   8.8  

>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score =  242 bits (592), Expect = 3e-65
 Identities = 110/156 (70%), Positives = 141/156 (90%), Gaps = 1/156 (0%)
 Frame = +1

Query: 154 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 330
           YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31  YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90

Query: 331 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 510
           RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD 
Sbjct: 91  RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149

Query: 511 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKA 618
           LEPGCSVLL+HK  ++VG+L DDTDPM++VMKL+KA
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKA 185


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 36/111 (32%), Positives = 64/111 (57%)
 Frame = +1

Query: 274 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 453
           LER  + L ++E FI+  E  K  + ++   + +V  ++  P+ +G   E ID N AIV 
Sbjct: 16  LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73

Query: 454 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMK 606
           ++ GS + V ILS +D++ L+P  SV L    +A+V +L  + D  +S+++
Sbjct: 74  STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
 Frame = +1

Query: 274 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 441
           LE+ K YLL   E+    + L+     + ++  K +D    L+     +G + + +D   
Sbjct: 8   LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67

Query: 442 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLE 612
            IV  S G  + V   + VD+  L  G  V L+     ++ +L  + DP+V  M +E
Sbjct: 68  FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIE 124


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
 Frame = +1

Query: 289 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 432
           D  +M+ EF R         EKI+E + K+ + +  P  VGN+ EI+D            
Sbjct: 49  DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108

Query: 433 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 585
                       A++ TS     ++ ++  V+ ++L PG  + +N   + ++  L  + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168

Query: 586 PMVSVMKLEK 615
             V  M++++
Sbjct: 169 SRVKAMEVDE 178


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +1

Query: 256 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 435
           R KLLKLE     L+ ++E + + E  K  +   E+ R   + LR + +   NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 241 PHTRCRLKLLKLERIKDYLLM 303
           PHT  RLK  K  +IKDYL M
Sbjct: 55  PHTAIRLKERKANKIKDYLTM 75


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 163 PIPTRVGKKKRKAKGPDAALK 225
           PIP+R G++KRK +GP   +K
Sbjct: 208 PIPSRRGRRKRKMRGPILPVK 228


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 304 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 402
           EE+ I ++E  +  EE++EEE  + +D    P+
Sbjct: 65  EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 325  QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 501
            Q+R K  EE +  E+ ++  L+    S  + EE+  +   +    V  S+HY  +L ++ 
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807

Query: 502  KDQLEPGCS 528
            KD  E  CS
Sbjct: 1808 KD--ESSCS 1814


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 171 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 347
           Y +  +EK+     C S      A +++  Q    +KNK    D   +H  SR LE+  G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208

Query: 348 RE 353
           R+
Sbjct: 209 RK 210


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 271 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 441
           KL  + D   MEEEF+   + +  + EK     SK   L+    + +  G L+E++ +N 
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225

Query: 442 AI 447
           A+
Sbjct: 226 AL 227


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +1

Query: 226 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 405
           L  VT   +  LK +   ++ DY    E++ +  + +K  E   E E S     +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 262  KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 378
            K+L+ +R+     M  E IRN    K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +1

Query: 271 KLERIKDYLLMEEEFIRNQERLKPQEEKIE-EERSKVDDLRGTPMSVGNLEEIIDDNHAI 447
           K + IK  +L EE+   N+E  +  EE  E EE   V+D +          ++ID  +A 
Sbjct: 358 KYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEK---------PQVIDQTNAS 408

Query: 448 VSTSVGSEHYVSILSFVDKDQ 510
           +  ++    Y++I+S VD ++
Sbjct: 409 L-VNLRKSIYLTIMSSVDFEE 428


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 277 ERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 435
           E+  +  L +EE +  +     ++   EE  S+ ++L G      N EE+ D+
Sbjct: 59  EQADELELSDEELVALESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,612
Number of Sequences: 5004
Number of extensions: 37837
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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