BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c10 (618 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 242 3e-65 SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 66 3e-12 SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 45 1e-05 SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 40 4e-04 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.18 SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.41 SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.71 SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 2.2 SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.8 SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 5.0 SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 5.0 SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 5.0 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 5.0 SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.8 SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 8.8 >SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 242 bits (592), Expect = 3e-65 Identities = 110/156 (70%), Positives = 141/156 (90%), Gaps = 1/156 (0%) Frame = +1 Query: 154 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 330 YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90 Query: 331 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 510 RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149 Query: 511 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKA 618 LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KA Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKA 185 >SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizosaccharomyces pombe|chr 3|||Manual Length = 389 Score = 66.5 bits (155), Expect = 3e-12 Identities = 36/111 (32%), Positives = 64/111 (57%) Frame = +1 Query: 274 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 453 LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73 Query: 454 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMK 606 ++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++ Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124 >SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizosaccharomyces pombe|chr 3|||Manual Length = 388 Score = 44.8 bits (101), Expect = 1e-05 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 4/117 (3%) Frame = +1 Query: 274 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 441 LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67 Query: 442 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLE 612 IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIE 124 >SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit Rpt5|Schizosaccharomyces pombe|chr 1|||Manual Length = 438 Score = 39.5 bits (88), Expect = 4e-04 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 21/130 (16%) Frame = +1 Query: 289 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 432 D +M+ EF R EKI+E + K+ + + P VGN+ EI+D Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108 Query: 433 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 585 A++ TS ++ ++ V+ ++L PG + +N + ++ L + D Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168 Query: 586 PMVSVMKLEK 615 V M++++ Sbjct: 169 SRVKAMEVDE 178 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 30.7 bits (66), Expect = 0.18 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +1 Query: 256 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 435 R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+ Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721 >SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 389 Score = 29.5 bits (63), Expect = 0.41 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1 Query: 241 PHTRCRLKLLKLERIKDYLLM 303 PHT RLK K +IKDYL M Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75 >SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1201 Score = 28.7 bits (61), Expect = 0.71 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 163 PIPTRVGKKKRKAKGPDAALK 225 PIP+R G++KRK +GP +K Sbjct: 208 PIPSRRGRRKRKMRGPILPVK 228 >SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 295 Score = 27.1 bits (57), Expect = 2.2 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +1 Query: 304 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 402 EE+ I ++E + EE++EEE + +D P+ Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97 >SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 2685 Score = 26.2 bits (55), Expect = 3.8 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 325 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 501 Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++ Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807 Query: 502 KDQLEPGCS 528 KD E CS Sbjct: 1808 KD--ESSCS 1814 >SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 245 Score = 25.8 bits (54), Expect = 5.0 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = +3 Query: 171 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 347 Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208 Query: 348 RE 353 R+ Sbjct: 209 RK 210 >SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 25.8 bits (54), Expect = 5.0 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Frame = +1 Query: 271 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 441 KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225 Query: 442 AI 447 A+ Sbjct: 226 AL 227 >SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF|Schizosaccharomyces pombe|chr 3|||Manual Length = 892 Score = 25.8 bits (54), Expect = 5.0 Identities = 16/60 (26%), Positives = 26/60 (43%) Frame = +1 Query: 226 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 405 L VT + LK + ++ DY E++ + + +K E E E S +G P S Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 25.8 bits (54), Expect = 5.0 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +1 Query: 262 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 378 K+L+ +R+ M E IRN K Q+E I ++ +++ Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228 >SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosaccharomyces pombe|chr 2|||Manual Length = 834 Score = 25.0 bits (52), Expect = 8.8 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = +1 Query: 271 KLERIKDYLLMEEEFIRNQERLKPQEEKIE-EERSKVDDLRGTPMSVGNLEEIIDDNHAI 447 K + IK +L EE+ N+E + EE E EE V+D + ++ID +A Sbjct: 358 KYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEK---------PQVIDQTNAS 408 Query: 448 VSTSVGSEHYVSILSFVDKDQ 510 + ++ Y++I+S VD ++ Sbjct: 409 L-VNLRKSIYLTIMSSVDFEE 428 >SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 597 Score = 25.0 bits (52), Expect = 8.8 Identities = 13/53 (24%), Positives = 25/53 (47%) Frame = +1 Query: 277 ERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 435 E+ + L +EE + + ++ EE S+ ++L G N EE+ D+ Sbjct: 59 EQADELELSDEELVALESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,147,612 Number of Sequences: 5004 Number of extensions: 37837 Number of successful extensions: 125 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 123 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 271646730 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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