Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c10
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.15 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.3  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 442 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVG 564
           AIV  ++GS  +  I  +V +  LE  C+++  H V  ++G
Sbjct: 335 AIVLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGILG 375


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 71  FPSLLNFKINTSAPIYNLLRLQS 3
           FP L+ +K   S P YN+   Q+
Sbjct: 198 FPPLVGWKDKRSHPAYNMTFAQN 220


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 319 RNQERLKPQEEKIEEERS 372
           R  E+L  +EEK+ EER+
Sbjct: 17  RQYEKLCNEEEKLLEERT 34


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 319 RNQERLKPQEEKIEEERS 372
           R  E+L  +EEK+ EER+
Sbjct: 17  RQYEKLCNEEEKLLEERT 34


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 319 RNQERLKPQEEKIEEERS 372
           R  E+L  +EEK+ EER+
Sbjct: 17  RQYEKLCNEEEKLLEERT 34


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 319 RNQERLKPQEEKIEEERS 372
           R  E+L  +EEK+ EER+
Sbjct: 17  RQYEKLCNEEEKLLEERT 34


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 475 YVSILSFVDKDQLEPGCSVL 534
           Y  I    DK  L+PGC+++
Sbjct: 83  YRMIQDAEDKGLLKPGCTII 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,789
Number of Sequences: 438
Number of extensions: 2419
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)