BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c09 (719 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 3.6 SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 27 3.6 SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 3.6 SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.6 SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 26 6.2 SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 8.2 >SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1147 Score = 26.6 bits (56), Expect = 3.6 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%) Frame = +2 Query: 353 DIQCCIRDANFRQHVICVEYKSYQKLLVKSTQLPHAGS-----LEREYNNLDEIVTTFRE 517 D+ ++DA Q + V+ S+QK LV+ + +A S +E Y + + +VT + Sbjct: 698 DLDKQLKDATASQKELIVQTSSFQKELVEERERHNAISKRLQEIESLYRDRELLVTNLED 757 Query: 518 FILDLT 535 ++D T Sbjct: 758 QLVDQT 763 >SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein Mad3|Schizosaccharomyces pombe|chr 3|||Manual Length = 310 Score = 26.6 bits (56), Expect = 3.6 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = +2 Query: 488 LDEIVTTFREFILDLTPYFHQLELIDRNCTVKEPRNPSFKDDYRKILIDDRIWL 649 +D I T F T + L++R CT + RNP +KDD R + RIW+ Sbjct: 76 IDYIKWTLDNFPQGETKTSGLVTLLER-CTREFVRNPLYKDDVRYL----RIWM 124 >SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual Length = 1097 Score = 26.6 bits (56), Expect = 3.6 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = -3 Query: 336 NRICTLISFSYFCT--SFNKLLSMRLNELIS 250 +R+C +I +S CT S N+ L +L +LIS Sbjct: 499 DRVCQIILYSSICTSCSINESLKTKLPKLIS 529 >SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 530 Score = 26.6 bits (56), Expect = 3.6 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = +2 Query: 71 FYLQYLCPLKHKICKKYSEMYAGGNSVKEIFTELFSSKSNAVLDLLDRFHFEVD 232 +YLQYL PL+ Y A N ++ +E S+ S+ +D + + +D Sbjct: 383 YYLQYLTPLRESGAIGYLGSPAISNVGEDWLSEFMSACSDCKIDFIACHWYGID 436 >SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosaccharomyces pombe|chr 1|||Manual Length = 501 Score = 25.8 bits (54), Expect = 6.2 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%) Frame = +2 Query: 143 NSVKEIFTEL-FSSKSNAVLDLLDRFHF 223 N + +F+ L + +KS+AV+ L D+FHF Sbjct: 64 NKLDNVFSSLEWLTKSDAVIYLEDQFHF 91 >SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1133 Score = 25.4 bits (53), Expect = 8.2 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = +1 Query: 127 NVCRREFSERDFYRTFF 177 + CR+ F+E+D Y+ FF Sbjct: 920 HTCRQPFNEQDVYKPFF 936 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,717,041 Number of Sequences: 5004 Number of extensions: 54076 Number of successful extensions: 143 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 143 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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