Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c09
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)                 29   2.9  
SB_50263| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)                   28   8.8  
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)             28   8.8  
SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06)                   28   8.8  
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.8  

>SB_28698| Best HMM Match : TPR_2 (HMM E-Value=0.00019)
          Length = 261

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +2

Query: 461 GSLEREYNNLDEIVTTFREFILDLTPYFHQLELIDRNCTVKEPRNPS 601
           G + +    LDE  T FR  +LDL P FH  E+  R+  V  P  PS
Sbjct: 165 GEILKASGELDEAGTHFRN-VLDLNPSFHPAEIHLRDIGV--PSTPS 208


>SB_50263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 416 SYQKLLVKSTQLPHAGSLEREYNNLDEIVTTFREFILDL 532
           S + LLVK      +GS +R++ NL E   TF  + LD+
Sbjct: 4   SSKPLLVKDEVASPSGSFKRKHRNLSERSVTFGTYNLDI 42


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 374  DANFRQHVICV--EYKSYQKLLVKSTQLPHAGSLEREYNNLDEIVTTFREFI 523
            D+  R+  IC   EYK Y K+L +   +   G   RE    D+++ TF   I
Sbjct: 902  DSAKRREFICAKYEYKKYSKILPEYGNVDVLGQALRESVQTDDVMRTFELII 953


>SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)
          Length = 903

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 416 SYQKLLVKSTQLPHAGSLEREYNNLDEIVT 505
           SY  LLV S QL     ++  +NNL+E VT
Sbjct: 406 SYVVLLVGSVQLVSVQPVDENFNNLEEWVT 435


>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 6   DLSIMLCIHFNKMLCD*NNFK------SSTYSTYVL*NIRSAKSIQKCMQEGI 146
           D S+  C  F + +C     K      SSTYST+   N +  KS++  ++EGI
Sbjct: 297 DFSVSPCTDFYQFVCGGWMQKNPIPRSSSTYSTFTKLNTKVEKSLRGILEEGI 349


>SB_20219| Best HMM Match : UCH (HMM E-Value=2.7e-06)
          Length = 543

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -3

Query: 303 FCTSFNKLLSMRLNELISTVFITESTSK*NLSKRSNTALLLLEKSSVKISFTEFPPAYIS 124
           FC   N+  +  LN LI T+F+T   ++ N+ K     LL  ++S + +  T   P  + 
Sbjct: 41  FCGLQNQGGTCYLNSLIQTLFLTPEFTE-NILKLEKDELLANDQSKLGVK-TRVIPLQLQ 98

Query: 123 EYFLQIL 103
           + F ++L
Sbjct: 99  KVFAKLL 105


>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 302 FVLHLTNFCR*DLMNLYRRSLSQSPPQNETYPKDLT 195
           F+LHL N C  + ++L R ++  S  +NE   K+LT
Sbjct: 426 FILHLLNVCSSNKLHLMRTAIFSS-SENEKIIKELT 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,221,381
Number of Sequences: 59808
Number of extensions: 358085
Number of successful extensions: 800
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)