Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c09
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       31   1.1  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    31   1.1  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    31   1.1  
Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical p...    30   1.9  
AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty ...    30   1.9  
AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty...    30   1.9  
AC024875-6|AAK29988.3|  193|Caenorhabditis elegans Rab family pr...    29   2.5  
AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family pr...    29   2.5  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   7.7  

>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 354 IFSVVSEMLTLDNMLYV*SIKAIRNYL*NLRNYHT--QGRWNE 476
           +  +VS  L LDNMLY+  +  I  YL ++ NY    +G  NE
Sbjct: 33  VLVIVSIALLLDNMLYMVIVPIIPKYLRDIHNYQVTFEGYHNE 75


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 354 IFSVVSEMLTLDNMLYV*SIKAIRNYL*NLRNYHT--QGRWNE 476
           +  +VS  L LDNMLY+  +  I  YL ++ NY    +G  NE
Sbjct: 33  VLVIVSIALLLDNMLYMVIVPIIPKYLRDIHNYQVTFEGYHNE 75


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 354 IFSVVSEMLTLDNMLYV*SIKAIRNYL*NLRNYHT--QGRWNE 476
           +  +VS  L LDNMLY+  +  I  YL ++ NY    +G  NE
Sbjct: 33  VLVIVSIALLLDNMLYMVIVPIIPKYLRDIHNYQVTFEGYHNE 75


>Z81122-11|CAB61031.1|  447|Caenorhabditis elegans Hypothetical
           protein T13F2.1 protein.
          Length = 447

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 461 GSLEREYNNLDEIVTTFREFILDLTPYFHQLELIDRNCTVKEPRNPSFKDD 613
           GS    Y N+D   T F  F       +  L  + + C  +EP  P  KDD
Sbjct: 33  GSAITTYKNMDA-TTVFHTFHTGSKEAYQWLTELKKECPTQEPEIPDIKDD 82


>AF114440-1|AAD13294.1|  447|Caenorhabditis elegans delta5-fatty
           acid desaturase protein.
          Length = 447

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 461 GSLEREYNNLDEIVTTFREFILDLTPYFHQLELIDRNCTVKEPRNPSFKDD 613
           GS    Y N+D   T F  F       +  L  + + C  +EP  P  KDD
Sbjct: 33  GSAITTYKNMDA-TTVFHTFHTGSKEAYQWLTELKKECPTQEPEIPDIKDD 82


>AF078796-1|AAC95143.1|  447|Caenorhabditis elegans delta 5 fatty
           acid desaturase protein.
          Length = 447

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 461 GSLEREYNNLDEIVTTFREFILDLTPYFHQLELIDRNCTVKEPRNPSFKDD 613
           GS    Y N+D   T F  F       +  L  + + C  +EP  P  KDD
Sbjct: 33  GSAITTYKNMDA-TTVFHTFHTGSKEAYQWLTELKKECPTQEPEIPDIKDD 82


>AC024875-6|AAK29988.3|  193|Caenorhabditis elegans Rab family
           protein 18, isoform a protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 241 KDRRYKFIKSHRQKFVK*STKVRERYQCT 327
           ++   KF K HR  F++ S K +E  QCT
Sbjct: 126 REEGLKFAKRHRTLFIEASAKTKEGVQCT 154


>AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family
           protein 18, isoform b protein.
          Length = 203

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 241 KDRRYKFIKSHRQKFVK*STKVRERYQCT 327
           ++   KF K HR  F++ S K +E  QCT
Sbjct: 136 REEGLKFAKRHRTLFIEASAKTKEGVQCT 164


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 276 SMRLNELISTVF--ITESTSK*NLSKRSNTALLLLEKSSVKISFTEFPPAYISEYFLQIL 103
           ++ LNEL+ST F  +  +T+  N+ K +      L+K S KI  T+F      + F Q +
Sbjct: 442 NLMLNELMSTSFEEVKVATNLCNVHKFATK----LQKHSEKIFSTQFETIVSYQDFSQKI 497

Query: 102 CFKGHRYCK 76
            FK    CK
Sbjct: 498 HFKKDLVCK 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,742,901
Number of Sequences: 27780
Number of extensions: 293617
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)