Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c09
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17410.2 68418.m02043 tubulin family protein similar to spind...    29   3.1  
At5g17410.1 68418.m02042 tubulin family protein similar to spind...    29   3.1  
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ...    28   7.2  
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ...    28   7.2  
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ...    28   7.2  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    27   9.5  

>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 679

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 107 ICKKYSEMYAGGNSVKEIFTELFSSKSNAVLDLLDRFHFE 226
           + +  ++  AG NSV+ +  ++    SNA L +L+R+ +E
Sbjct: 210 LLQSQAKAMAGDNSVRSLLEKMTECASNAYLSILERWVYE 249


>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 678

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 107 ICKKYSEMYAGGNSVKEIFTELFSSKSNAVLDLLDRFHFE 226
           + +  ++  AG NSV+ +  ++    SNA L +L+R+ +E
Sbjct: 209 LLQSQAKAMAGDNSVRSLLEKMTECASNAYLSILERWVYE 248


>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); identical to coatomer protein
           complex, beta prime (beta'-COP) protein {Arabidopsis
           thaliana} (GI:9294445); similar to Coatomer beta'
           subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:P35606) [Homo sapiens]
          Length = 918

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 425 KLLVKSTQLPHAGSLEREY--NNLDEIVTTFREFILDLTP 538
           +LLV+S ++P A  + R Y  + + EIV  +RE +  + P
Sbjct: 744 QLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNP 783


>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); identical to coatomer protein
           complex, beta prime (beta'-COP) protein {Arabidopsis
           thaliana} (GI:9294445); similar to Coatomer beta'
           subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:P35606) [Homo sapiens]
          Length = 918

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 425 KLLVKSTQLPHAGSLEREY--NNLDEIVTTFREFILDLTP 538
           +LLV+S ++P A  + R Y  + + EIV  +RE +  + P
Sbjct: 744 QLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNP 783


>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
           (beta prime), putative contains 7 WD-40 repeats
           (PF00400) (1 weak); identical to coatomer protein
           complex, beta prime (beta'-COP) protein {Arabidopsis
           thaliana} (GI:9294445); similar to Coatomer beta'
           subunit (Beta'-coat protein) (Beta'-COP) (p102)
           (SP:P35606) [Homo sapiens]
          Length = 909

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 425 KLLVKSTQLPHAGSLEREY--NNLDEIVTTFREFILDLTP 538
           +LLV+S ++P A  + R Y  + + EIV  +RE +  + P
Sbjct: 744 QLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSKVNP 783


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 308 ENDINVQIRFGSALCDIQCCIRDANFRQHVICVEYKSYQKLLVKSTQLPHAG 463
           E    +++RF +A      CIR     Q    +EYK+ + +L   T  PH G
Sbjct: 76  ETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVL--QTINPHTG 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,387,547
Number of Sequences: 28952
Number of extensions: 253000
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)