Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c08
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    28   0.99 
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    27   1.7  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   5.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.0  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   7.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.2  

>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 497 ENKSPVIFSCEVAHHI*YALWVQLIDYLDSF 405
           + + PV F   V  H+  + W++L DY+ +F
Sbjct: 48  QGQKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 333 QTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKV 506
           QT LQ +   N     +   L+  E I+ V +  P    D++++  A Y  TLI NK+
Sbjct: 13  QTALQPNSYVNFDAQQTSSTLLPVEVIDSVMQYLPAH--DVIQSSFASYPLTLIANKI 68


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 248 INTNMSFFYFMKGKMNRDPYSQNHNGQNRRLVSHS 144
           + T++ F  F+KGK   D +    +G+    V HS
Sbjct: 153 VETDLHFICFVKGKSKDDNHFYELDGRQEGPVQHS 187


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 264 LLPVTSQAGFHMMIPLLTSYKAIQTTLQTDE 356
           +LP +S+   H + PL T+ + +   L++DE
Sbjct: 437 MLPTSSEDNLHPLQPLTTADEEMDLDLKSDE 467


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 213 LHKVEEGHVGVYYRG 257
           L K+EEG  G+ YRG
Sbjct: 77  LEKIEEGSYGIVYRG 91


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 489 ESCHIQL*SCAPYLVRFVGPAY 424
           E+C  QL +  PYL+R++   Y
Sbjct: 322 ENCSFQLYNLFPYLIRYLSDDY 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,883
Number of Sequences: 5004
Number of extensions: 44221
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)