BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c08 (527 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 28 0.99 SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe... 27 1.7 SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa... 25 5.3 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.0 SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 25 7.0 SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.2 >SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 177 Score = 27.9 bits (59), Expect = 0.99 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -1 Query: 497 ENKSPVIFSCEVAHHI*YALWVQLIDYLDSF 405 + + PV F V H+ + W++L DY+ +F Sbjct: 48 QGQKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78 >SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe|chr 1|||Manual Length = 243 Score = 27.1 bits (57), Expect = 1.7 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +3 Query: 333 QTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKV 506 QT LQ + N + L+ E I+ V + P D++++ A Y TLI NK+ Sbjct: 13 QTALQPNSYVNFDAQQTSSTLLPVEVIDSVMQYLPAH--DVIQSSFASYPLTLIANKI 68 >SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosaccharomyces pombe|chr 1|||Manual Length = 222 Score = 25.4 bits (53), Expect = 5.3 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = -1 Query: 248 INTNMSFFYFMKGKMNRDPYSQNHNGQNRRLVSHS 144 + T++ F F+KGK D + +G+ V HS Sbjct: 153 VETDLHFICFVKGKSKDDNHFYELDGRQEGPVQHS 187 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 25.0 bits (52), Expect = 7.0 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +3 Query: 264 LLPVTSQAGFHMMIPLLTSYKAIQTTLQTDE 356 +LP +S+ H + PL T+ + + L++DE Sbjct: 437 MLPTSSEDNLHPLQPLTTADEEMDLDLKSDE 467 >SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schizosaccharomyces pombe|chr 2|||Manual Length = 398 Score = 25.0 bits (52), Expect = 7.0 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 213 LHKVEEGHVGVYYRG 257 L K+EEG G+ YRG Sbjct: 77 LEKIEEGSYGIVYRG 91 >SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual Length = 978 Score = 24.6 bits (51), Expect = 9.2 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -3 Query: 489 ESCHIQL*SCAPYLVRFVGPAY 424 E+C QL + PYL+R++ Y Sbjct: 322 ENCSFQLYNLFPYLIRYLSDDY 343 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,170,883 Number of Sequences: 5004 Number of extensions: 44221 Number of successful extensions: 97 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 97 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 216376042 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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