Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c08
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...   120   1e-27
05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119     27   7.1  
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     27   9.3  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score =  120 bits (288), Expect = 1e-27
 Identities = 53/105 (50%), Positives = 76/105 (72%)
 Frame = +3

Query: 213 LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 392
           LH+V EGHVGVY+RGGALL   +  GFH+ +P +T ++ IQ       V+N+PCGT GGV
Sbjct: 157 LHQVPEGHVGVYWRGGALLETITPPGFHVKLPWITQFEPIQ-------VRNIPCGTKGGV 209

Query: 393 LIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQF 527
           +I F++IEVVN+L  + V + + N+   YD+T I++K+HHE+NQF
Sbjct: 210 MISFDKIEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQF 254


>05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119
          Length = 248

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
 Frame = +3

Query: 291 FHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLI------YFERIEVVN 425
           F M  P  TS    Q  +     K VPC  SGG+        YFE + V N
Sbjct: 123 FDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYFELVTVFN 173


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 444 VLDMVRNFTAEYDRTLIFNKVH 509
           VLD+++N TAE +   IF K+H
Sbjct: 507 VLDLIQNITAEGNFVKIFKKLH 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,169,864
Number of Sequences: 37544
Number of extensions: 256506
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)