Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c08
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.1  
SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  

>SB_2845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +3

Query: 216 HKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQT----TLQTDEVKNVPCGTS 383
           H V++GH+ + Y G A L  +    F    P     K I      TL  DE  N  C  S
Sbjct: 187 HMVDKGHMKIDYEGDAALEYSDYYDFSTSYPSDNPDKEIDETASGTLSVDETTNELCLPS 246

Query: 384 G 386
           G
Sbjct: 247 G 247


>SB_57647| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 318

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 258 GALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNV 368
           GA +P TSQ G ++ + LL+  K  +   Q    KN+
Sbjct: 201 GAWIPSTSQVGEYLQVDLLSVMKINKVATQGQPTKNI 237


>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 405 QNKSTPHHLCHKAHF*LHQFVKLSEWLCMMLEVVSSC 295
           Q +ST  H+ + A    + FVK+++WL +M   V +C
Sbjct: 62  QRESTLWHVRYCARSYFNLFVKVADWLTVMFGDVRAC 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,995
Number of Sequences: 59808
Number of extensions: 312672
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)