BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12c08 (527 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical... 168 2e-42 U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 29 2.1 U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 29 2.1 Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical pr... 27 6.3 >CU457741-16|CAM36358.1| 312|Caenorhabditis elegans Hypothetical protein C42C1.15 protein. Length = 312 Score = 168 bits (409), Expect = 2e-42 Identities = 77/121 (63%), Positives = 95/121 (78%), Gaps = 1/121 (0%) Frame = +3 Query: 168 LAIVILAVGVTVHF-SLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTL 344 LA+ + A+ + + +LHK+EEGHVGVYYRGGALL + G+HM IP LT+ K++Q TL Sbjct: 5 LALGLFALWIAIFSQALHKIEEGHVGVYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTL 64 Query: 345 QTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIFNKVHHELNQ 524 QTDE NVPCGTSGGVLIYF+RIEVVN L SV +V+N+T +YDR LIFNKVHHE+NQ Sbjct: 65 QTDEATNVPCGTSGGVLIYFDRIEVVNFLSQDSVYAIVKNYTVDYDRPLIFNKVHHEVNQ 124 Query: 525 F 527 F Sbjct: 125 F 125 >U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein 1, isoform a protein. Length = 330 Score = 29.1 bits (62), Expect = 2.1 Identities = 21/99 (21%), Positives = 41/99 (41%) Frame = +3 Query: 174 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 353 ++ L V+V + V+E V +R G L+P G +IP + ++ I + + Sbjct: 51 LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110 Query: 354 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFT 470 V + + V + + + DP + + V N T Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT 149 >U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein 1, isoform b protein. Length = 325 Score = 29.1 bits (62), Expect = 2.1 Identities = 21/99 (21%), Positives = 41/99 (41%) Frame = +3 Query: 174 IVILAVGVTVHFSLHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTD 353 ++ L V+V + V+E V +R G L+P G +IP + ++ I + + Sbjct: 51 LIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASY 110 Query: 354 EVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFT 470 V + + V + + + DP + + V N T Sbjct: 111 NVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNAT 149 >Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical protein F21A3.2b protein. Length = 544 Score = 27.5 bits (58), Expect = 6.3 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +2 Query: 269 TSYKSSWFSHDDTTSNIIQSHSD 337 TSY +W ++DDT +I++ +D Sbjct: 107 TSYSITWMTYDDTLKSIVEYGTD 129 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,923,418 Number of Sequences: 27780 Number of extensions: 245278 Number of successful extensions: 413 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 411 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 413 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1038911524 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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