Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c08
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...   144   3e-35
At1g13600.1 68414.m01595 bZIP transcription factor family protei...    29   2.6  
At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containi...    28   4.5  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    27   5.9  

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score =  144 bits (349), Expect = 3e-35
 Identities = 67/130 (51%), Positives = 92/130 (70%), Gaps = 5/130 (3%)
 Frame = +3

Query: 153 DQSSILAI--VILAVGVTVHFS---LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLT 317
           D SSIL    V  A+   V F    +H+V EGHVG Y+RGGALL + ++ GFH+ +P +T
Sbjct: 22  DISSILIAFGVFAAIAALVMFPSSLVHQVPEGHVGAYWRGGALLNIITEPGFHLKLPFIT 81

Query: 318 SYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLIF 497
           +Y+ +Q TLQTD+V+++PCGT GGVLI FE+IEVVN+L    V D + N+   YD T I+
Sbjct: 82  NYEPVQVTLQTDQVRDIPCGTKGGVLITFEKIEVVNRLRKDFVYDTLLNYGVNYDNTWIY 141

Query: 498 NKVHHELNQF 527
           +K+HHE+NQF
Sbjct: 142 DKIHHEINQF 151


>At1g13600.1 68414.m01595 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 196

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 254 PIINTNMSFFYFMKGKMNRDPYSQNHNGQN 165
           P   T+ S FY + G +N + YS + NGQ+
Sbjct: 35  PSSPTSCSSFYHLNGLINNNNYSSSSNGQD 64


>At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 657

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 12  IFSSLCLNLKINNFN*ICPYSDSMKSNLI 98
           +FS+LCLNL+   +N +  +S S+ + LI
Sbjct: 32  LFSALCLNLRQRRWNTLHQFSSSLTNPLI 60


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 191 RGHGSFFPS*SRRRTCWCLLSGWSFITSYKSSWFSHDDTTSNIIQSHSDNF 343
           RG      +  +R  CW +LS  S+      +W  +D+ T N   S  DN+
Sbjct: 307 RGEEEKVENEKKRPPCWNMLSSKSYSEEESGAW--NDEDTINRSSSKEDNW 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,055,820
Number of Sequences: 28952
Number of extensions: 222623
Number of successful extensions: 462
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)