Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c07
         (544 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031038-1|AAH31038.1|  314|Homo sapiens KCTD17 protein protein.       29   8.0  
BC025403-1|AAH25403.1|  290|Homo sapiens potassium channel tetra...    29   8.0  
AL022314-1|CAA18441.1|  290|Homo sapiens protein ( Human DNA seq...    29   8.0  
AK022304-1|BAB14007.1|  290|Homo sapiens protein ( Homo sapiens ...    29   8.0  

>BC031038-1|AAH31038.1|  314|Homo sapiens KCTD17 protein protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  WQHEDYIRIAVS-DAGAEHLLQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQ 192
           W+ E  + I  S + G+E   + L   + +    HSTP+GL  +++ S +TK+T+  LE+
Sbjct: 158 WRFEQLVNIGSSYNYGSEDQAEFLCVVSKEL---HSTPNGL--SSESSRKTKSTEEQLEE 212

Query: 193 EE 198
           ++
Sbjct: 213 QQ 214


>BC025403-1|AAH25403.1|  290|Homo sapiens potassium channel
           tetramerisation domain containing 17 protein.
          Length = 290

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  WQHEDYIRIAVS-DAGAEHLLQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQ 192
           W+ E  + I  S + G+E   + L   + +    HSTP+GL  +++ S +TK+T+  LE+
Sbjct: 158 WRFEQLVNIGSSYNYGSEDQAEFLCVVSKEL---HSTPNGL--SSESSRKTKSTEEQLEE 212

Query: 193 EE 198
           ++
Sbjct: 213 QQ 214


>AL022314-1|CAA18441.1|  290|Homo sapiens protein ( Human DNA
           sequence from clone RP5-1170K4 on chromosome
           22q12.2-13.1.Contains the MGAT3 gene for mannosyl
           (beta-1,4-)-glycoprotein  ).
          Length = 290

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  WQHEDYIRIAVS-DAGAEHLLQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQ 192
           W+ E  + I  S + G+E   + L   + +    HSTP+GL  +++ S +TK+T+  LE+
Sbjct: 158 WRFEQLVNIGSSYNYGSEDQAEFLCVVSKEL---HSTPNGL--SSESSRKTKSTEEQLEE 212

Query: 193 EE 198
           ++
Sbjct: 213 QQ 214


>AK022304-1|BAB14007.1|  290|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12242 fis, clone MAMMA1001292. ).
          Length = 290

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  WQHEDYIRIAVS-DAGAEHLLQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQ 192
           W+ E  + I  S + G+E   + L   + +    HSTP+GL  +++ S +TK+T+  LE+
Sbjct: 158 WRFEQLVNIGSSYNYGSEDQAEFLCVVSKEL---HSTPNGL--SSESSRKTKSTEEQLEE 212

Query: 193 EE 198
           ++
Sbjct: 213 QQ 214


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,773,716
Number of Sequences: 237096
Number of extensions: 1001843
Number of successful extensions: 2050
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2050
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)