Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c04
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   240   6e-64
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   237   4e-63
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    30   1.4  
05_04_0324 - 20273797-20274261                                         29   2.4  
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    29   3.2  
01_05_0125 - 18382402-18382761,18382863-18383036                       28   4.2  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  240 bits (587), Expect = 6e-64
 Identities = 105/172 (61%), Positives = 134/172 (77%)
 Frame = +2

Query: 29  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
           MSHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60

Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
           ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK 544
           NW              +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMK 172


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  237 bits (580), Expect = 4e-63
 Identities = 104/172 (60%), Positives = 133/172 (77%)
 Frame = +2

Query: 29  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 208
           MSHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60

Query: 209 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 388
           ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYK 120

Query: 389 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK 544
           NW              +  + G+K I+   +KM +Y SVVRVI HTQ++ +K
Sbjct: 121 NWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMK 172


>07_03_0481 -
           18572206-18574314,18574591-18575185,18575304-18575371,
           18577344-18577458,18578179-18578333,18578673-18580621,
           18580691-18581372,18581550-18581621,18582558-18583199,
           18583301-18583402,18585011-18585100
          Length = 2192

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 20  SSSMSHRKFSAPRHGSM-GFYPKKRSRRHRGKVKAFPKDDPSKPVHLT 160
           S+S+ H +   P+  S+ G  P   +++ + KVK   K  P   VH+T
Sbjct: 237 STSLEHSESPPPKRKSLDGRTPASSTKKGKKKVKFVDKKHPENAVHIT 284


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 122 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 295
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 296 VGYIETPHGLRAL 334
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 463 NRKRFQEDDPLL*CCKSHCPHSNEA 537
           N +RF  +DPLL CC  H P+   A
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA 321


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 377 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 273
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,576
Number of Sequences: 37544
Number of extensions: 331993
Number of successful extensions: 794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)