Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12c04
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 262 2e-70
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 258 3e-69
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3) 27 7.6
SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17) 27 7.6
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.6
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 262 bits (641), Expect = 2e-70
Identities = 115/171 (67%), Positives = 137/171 (80%)
Frame = +2
Query: 32 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 211
SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 1 SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60
Query: 212 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 391
+PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKN
Sbjct: 61 KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 120
Query: 392 WYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK 544
W W D+ G+KSIE+DF M +YC V+RVI HTQ KLLK
Sbjct: 121 WCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLK 171
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 258 bits (631), Expect = 3e-69
Identities = 113/171 (66%), Positives = 135/171 (78%)
Frame = +2
Query: 17 LSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHV 196
L MSHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH+
Sbjct: 44 LEPKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHI 103
Query: 197 VREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 376
+RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R
Sbjct: 104 LREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 163
Query: 377 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 529
RFYKNW W D+ G+KSIE+DF M +YC V+RVI HTQ
Sbjct: 164 RFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214
>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 38 RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 154
R+F P+ G +G Y ++ R H GK + PK +P + +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184
>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 95 RRHRGKVKAFPKDDPSKPVHL 157
R HR + AFP D P+ PV L
Sbjct: 7 RAHRSSLHAFPPDGPAHPVSL 27
>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 269 TPPMVCVGVVGYIETPHGLRAL-LTVWAEHMSEDCRRRFY 385
TP +C+G GY+ T L+ L LTV M E + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340
>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 95 RRHRGKVKAFPKDDPSKPVHL 157
R HR + AFP D P+ PV L
Sbjct: 15 RAHRSSLHAFPPDGPAHPVSL 35
>SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)
Length = 298
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = +2
Query: 77 YPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 211
+P ++ + +V +P D +H+ AF+G+K+ T + P+
Sbjct: 70 HPSSQNVKTSLRVPIYPPKDIQVDLHIKAFVGHKSRFTMYIPCPE 114
>SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)
Length = 344
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 80 PKKRSRRHRGKVKAFPKDDPSKP 148
PK RR+R K+ PK DP P
Sbjct: 279 PKHNIRRNRRKLNMLPKPDPETP 301
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 14 RLSSSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI-GYKAGMT 190
R S + S+P S +K ++ + + + PKD S P HL A + + +
Sbjct: 361 RRSVELWQPSLSSPPSWSPTPSMRKSKKKEKRQSSSRPKDADSSPQHLAASVESFANYLK 420
Query: 191 HVVREPD 211
H+VR D
Sbjct: 421 HLVRPED 427
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 517 NDSYNTTVADHLLEIFFY 464
NDSYN T+ D + E+F Y
Sbjct: 529 NDSYNGTINDRVPEVFLY 546
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,791
Number of Sequences: 59808
Number of extensions: 376451
Number of successful extensions: 915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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