Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12c02
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   1.5  
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c...    26   3.5  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   3.5  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   3.5  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   8.1  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    25   8.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.1  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   8.1  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   8.1  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 323 DERETPLAGVFCHYETQERS*YQSRRFRRLEEYRNGLR 436
           +ER    AG F H+   E     S  FRR +E R   R
Sbjct: 362 EERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERR 399


>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 405 VVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWDHFTDDAKEKYLPRRYQ*NSKGK 572
           + W  +EM  G    + T+ D ++IF D + T+  F D     ++      ++KGK
Sbjct: 31  IYWSLLEMRKGSELKL-TKYD-DEIFEDLINTFPEFKDPKTASFVNEDEMKSAKGK 84


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 291  QEDETKQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSV-VWKNIEMASGPNSPVQTEQD 467
            +ED TK V  ++++   + +   I  L+ ++  NH  +  +W  I   + P S + T+++
Sbjct: 1028 EEDITKAVEKRIDITSRASISGAIEALRNDLGQNHDFATEIWNAI---NNPKSDLLTKRN 1084

Query: 468  I 470
            +
Sbjct: 1085 L 1085


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 459 EQDIEDIFGDSLKTWDHFTDDAKEKYLPRRYQ*N 560
           E+DIED+ G++L   D   +D   + + R YQ N
Sbjct: 50  EEDIEDLDGEALDVEDEEGEDLFGEGMERDYQQN 83


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 122 PSGLCRTADPSAETKTTQANLEQEEPPAL 208
           P  L   +DP+++       +EQE P AL
Sbjct: 15  PDALLVNSDPASKVDNVSVKIEQESPLAL 43


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 445 ELGPEAISIFFQTTESP 395
           +LGP  +SIFFQ  + P
Sbjct: 315 QLGPNGLSIFFQKIKDP 331


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 23  EDYIRIAVSDAGAEHLLQHLHDETTQSG*HHSTPSGLCRTADPSAETKTTQANLEQE 193
           ED+ ++   + G E   Q L      SG   S PSGL   ++PS    +T   L+ E
Sbjct: 118 EDFGKLLAKEMGEEAAGQVL------SGVGFSIPSGLVPPSEPSKTVSSTTEELQNE 168


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 52  RWCRASPAASS*RNNTVRMTSFNTLWTMSNSRSISRNKNYTSKP 183
           RW   +P + S  +NT  +    T +  +N + IS+++   SKP
Sbjct: 197 RWLEFAPQSFS--SNTNSVNPLQTTFESTNIQEISQSRTKISKP 238


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +2

Query: 8   NCWQHEDYIRIAVSDAGAEHLLQHLHDETTQSG*HHSTPS--GLCRTADPSAETKTTQAN 181
           +CWQH   + +A  D    +  +  H  +  S    ++P+     +TAD  A  +  + N
Sbjct: 42  DCWQHASCVGLADKDIPESYYCEVCHSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKN 101

Query: 182 LEQ 190
            E+
Sbjct: 102 NEE 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,585
Number of Sequences: 5004
Number of extensions: 32237
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)