Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b24
         (264 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54FN7 Cluster: Putative uncharacterized protein; n=14;...    32   2.2  
UniRef50_A6DQG4 Cluster: Putative uncharacterized protein; n=1; ...    32   2.9  
UniRef50_A5K035 Cluster: Putative uncharacterized protein; n=3; ...    31   5.1  

>UniRef50_Q54FN7 Cluster: Putative uncharacterized protein; n=14;
            Dictyostelium discoideum|Rep: Putative uncharacterized
            protein - Dictyostelium discoideum AX4
          Length = 3109

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = -1

Query: 177  IYHSYNKLQVTYLMQTNKIFFKIHFTKSNQVSARGQNRIF 58
            + +S N +Q+ + +  NK++++ +F +SN + ++ Q+  F
Sbjct: 1842 LINSDNNIQIEFTINNNKVYYERYFKRSNNIKSKLQSESF 1881


>UniRef50_A6DQG4 Cluster: Putative uncharacterized protein; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Putative
           uncharacterized protein - Lentisphaera araneosa HTCC2155
          Length = 369

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 210 LNCIFYAT*KNIYHSY---NKLQVTYLMQTNKIFFKIHFTKSNQVSARGQNRIFTHF 49
           LN IFY      Y  Y   NKLQ++YL +++ +FF I  T  N  +  G    FT F
Sbjct: 111 LNSIFYIVNTVAYAYYWSLNKLQISYLYESSFVFFLIISTLLNIDNFYGIINTFTIF 167


>UniRef50_A5K035 Cluster: Putative uncharacterized protein; n=3;
           Eukaryota|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 4534

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 216 NFLNCIFYAT*KNIYHSYNKLQVTYLMQTNKIFFKIHFTKSNQVSARGQNRIFTHFTII 40
           NF     YA  + +YH Y+   +  L++  K+F  +     + VSA   NR   H  +I
Sbjct: 434 NFAEDENYAQAERVYHFYSSFLINQLLKNKKLFRPV----DSNVSANYMNRSINHTNVI 488


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,172,331
Number of Sequences: 1657284
Number of extensions: 2146514
Number of successful extensions: 5249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5249
length of database: 575,637,011
effective HSP length: 65
effective length of database: 467,913,551
effective search space used: 10294098122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)