Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b24
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    24   4.0  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    23   7.0  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    23   9.2  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 76  RTEQNLYSLHYHNP 35
           +T Q +YS+H H+P
Sbjct: 88  QTRQKIYSIHIHSP 101


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -3

Query: 103 HEIKSSLRTRTEQNLYSLHYHNPCTRSIRHHXRH 2
           H  K   RTR+     S   H P    +  H RH
Sbjct: 135 HRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRH 168


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 116 KNILLVCIKYVTCNLL 163
           K +L+ CIK+++C +L
Sbjct: 137 KPLLISCIKFISCVIL 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,963
Number of Sequences: 5004
Number of extensions: 10470
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)