Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b24
         (264 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)                      25   9.6  
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                25   9.6  
SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.6  

>SB_25011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 108 HFTKSNQVSARGQNRIFTHFTIIIRVLVVFVITDVI 1
           +F+K+     R  N I    TII+ ++++ ++  V+
Sbjct: 633 YFSKTQSYHRRHYNHIIIVITIIVIIIIIIIVVVVV 668


>SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)
          Length = 684

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 189 T*KNIYHSYNKLQVTYLMQTNKI-FFKIHFTKSNQVSAR 76
           T  N+Y+ Y  LQ++  ++  K  F K+   + NQVS+R
Sbjct: 146 TPNNVYNRYMDLQISEAVKVYKCDFLKLEIVE-NQVSSR 183


>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 103 HEIKSSLRTRTEQNLYSLHYHNPCTRSIRHHXRH 2
           H+ K +   R  Q   + H+H    +  +HH RH
Sbjct: 594 HQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHRH 627


>SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 150 VTYLMQTNKIFFKIHFTKSNQVSARGQNR 64
           V  +  +N++  KIH   SNQ+S   Q R
Sbjct: 261 VGQICPSNQVSHKIHNNLSNQISLENQGR 289


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,111,975
Number of Sequences: 59808
Number of extensions: 68902
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 16,821,457
effective HSP length: 64
effective length of database: 12,993,745
effective search space used: 298856135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)