Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b24
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    25   7.4  
U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine rece...    25   9.8  

>Z48584-5|CAD57717.1|  501|Caenorhabditis elegans Hypothetical
           protein ZK1321.2d protein.
          Length = 501

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 162 NKLQVTYLMQTNKIFFKIHFTKSNQVSARGQNRIF 58
           NK Q  ++  TN+ FF  H T S+  +   +N +F
Sbjct: 128 NKRQHFFVSDTNEFFFDRHRTTSSSFTFEIRNYLF 162


>Z48584-4|CAD57716.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1321.2c protein.
          Length = 536

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 162 NKLQVTYLMQTNKIFFKIHFTKSNQVSARGQNRIF 58
           NK Q  ++  TN+ FF  H T S+  +   +N +F
Sbjct: 163 NKRQHFFVSDTNEFFFDRHRTTSSSFTFEIRNYLF 197


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 123 IFFKIHFTKSNQVSARGQNRIFTHFTIIIRVLVVFVIT 10
           +FF I    S   +  G N++F H TI +  +   +I+
Sbjct: 246 LFFVISMLISRMYTNSGINKLFDHVTISLTTIFPIIIS 283


>U64846-9|AAG24117.3|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein193 protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 157 FIVTMINIFLCCIENTV 207
           FI+++I + LCCIE +V
Sbjct: 198 FIISVIFVVLCCIEISV 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,991,347
Number of Sequences: 27780
Number of extensions: 57670
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)