Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b24
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   3.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   4.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    19   7.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    19   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   7.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   7.8  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 204 CIFYAT*KNIYHSYNKLQVTYLMQTNK 124
           C F+ T + IYH+ +K   T+L+  N+
Sbjct: 200 CRFWPTGRGIYHNDDK---TFLVWCNE 223


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +3

Query: 150 LVIYCNYDKYFFM 188
           ++ Y N+D++FF+
Sbjct: 6   VIKYINFDRFFFI 18


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 129 NKIFFKIHFTKSNQVSAR 76
           + +FFK H T++ Q   +
Sbjct: 59  DSVFFKSHITEAFQTQCK 76


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 63  IFTHFTIIIRVLVVFVITDVI 1
           IFT FTII  + V+     +I
Sbjct: 533 IFTLFTIIATIAVLLSAPHII 553


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 129 NKIFFKIHFTKSNQVSAR 76
           + +FFK H T++ Q   +
Sbjct: 59  DSVFFKSHITEAFQTQCK 76


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 191 QHKKIFIIVT 162
           QHK +F++VT
Sbjct: 281 QHKAMFLVVT 290


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 191 QHKKIFIIVT 162
           QHK +F++VT
Sbjct: 276 QHKAMFLVVT 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,561
Number of Sequences: 438
Number of extensions: 799
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)