Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b24
         (264 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14170.1 68417.m02188 pentatricopeptide (PPR) repeat-containi...    26   3.0  
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    25   9.1  

>At4g14170.1 68417.m02188 pentatricopeptide (PPR)
          repeat-containing protein contains Pfam profile
          PF01535: PPR repeat
          Length = 458

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 88 SLRTRTEQNLYSLHYHNPCTRSIRHHXRH 2
          S+ T+   +L+SL +H+P  + +RH   H
Sbjct: 9  SVTTQNPPDLFSLLHHSPNAKHLRHLHAH 37


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 109 SLHEIKSSLRTRTEQNLYSLH-YHNPCTRSIRHHXRH 2
           SL+   S L  R  ++    H +HNP + S RHH  H
Sbjct: 81  SLYRAFSGLTNRASRSPKKSHKHHNPLS-SKRHHHHH 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,594
Number of Sequences: 28952
Number of extensions: 45942
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)