Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b23
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    70   2e-12
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522...    30   1.2  
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    30   1.6  
01_06_1545 + 38144624-38145301                                         30   1.6  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   6.7  
05_03_0373 - 13194723-13195847,13196219-13196809                       28   6.7  

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 50/161 (31%), Positives = 81/161 (50%)
 Frame = +3

Query: 99  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 278
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+  T   ES  VFG L ++
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57

Query: 279 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 458
             +K+  LT   K N+++ L T +T+ +    GLK  L      Q   ++GKL+  + ++
Sbjct: 58  --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112

Query: 459 TVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKS 581
              +N ++ L+ + P+V+++ V   +    GV   FDT  S
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATS 152


>12_02_1123 -
           26250300-26250362,26251988-26252042,26252128-26252224,
           26252364-26253048,26253354-26253721,26253931-26254074,
           26254925-26255276
          Length = 587

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 108 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 281
           P Y   G +  D+ SK +H     LDL   S  + G++F SG+ S   +  V   L+ + 
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314

Query: 282 AVKDYGLTFTEKWNTDNT 335
           A+KDY    T+  N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332


>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 1/146 (0%)
 Frame = +3

Query: 150 SKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE-KWNT 326
           S  ++F V K       + G +     T+ ++ G     +SS +  K    T  + K +T
Sbjct: 54  SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110

Query: 327 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPV 506
           ++ ++T +T+ D + +   VT      P   +  GK++  + ++  +  T + +    PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165

Query: 507 VDVAAVLNYQGWLAGVHTQFDTQKSK 584
           V+ +     QG   G    FDT   K
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGK 191


>01_06_1545 + 38144624-38145301
          Length = 225

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
 Frame = -1

Query: 583 LLFCVSNWVCTPASQPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP-- 428
           ++ C ++ +  P  QP   +TAA+S++ P  SRSK+   +   TVS      E  N    
Sbjct: 17  MIICSTHRLLHP--QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGY 74

Query: 427 VLVPVCGAKVPSRVTLRPA 371
           V+VP   A  P+RV +  A
Sbjct: 75  VVVPGVDAPAPARVVVSDA 93


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 448 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 320
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 396 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 494
           GT+  Q  T TGK+  +FT +    +  LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,100
Number of Sequences: 37544
Number of extensions: 330318
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)