Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b22
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1016 + 13228113-13228964                                         29   2.7  
03_06_0331 - 33181757-33181795,33182325-33182453,33182941-331829...    28   8.3  
02_01_0655 + 4867737-4868642                                           28   8.3  

>03_02_1016 + 13228113-13228964
          Length = 283

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 469 HRAVLRCSSAAPAPSPRTRCTVSVTSHDVGH 377
           H A  RCSS    P PR R T  + S   GH
Sbjct: 226 HAAARRCSSGNHQPVPRARSTTGMDSLGHGH 256


>03_06_0331 -
           33181757-33181795,33182325-33182453,33182941-33182967,
           33183459-33183545,33183827-33183975,33185467-33185521,
           33185596-33187584,33188705-33188782
          Length = 850

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 258 CGARCQGGATVXAEADSPARGHHLVHELD 344
           C     GG  V    D  ++GHH+VH  +
Sbjct: 134 CSCTMNGGQCVCGGLDKHSQGHHVVHNTE 162


>02_01_0655 + 4867737-4868642
          Length = 301

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 336 ELDRRCEPLLPLLPWPTSCEVTETVHRVRGEGAGAALEQRSTARCGALRTLAGS 497
           E+DR C+ + P    PT  E +E  H   G G+G     R   R G    ++ +
Sbjct: 120 EIDRPCKRVSPGPGSPTGSERSELSHGGCGSGSGGGQVFRPVPRPGGFDAISAA 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,144,581
Number of Sequences: 37544
Number of extensions: 209183
Number of successful extensions: 867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)