Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b22
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_29437| Best HMM Match : POPLD (HMM E-Value=3.9)                     29   2.8  
SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_43036| Best HMM Match : Chorion_3 (HMM E-Value=1.6)                 29   3.6  
SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)                     28   6.4  
SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)                    28   6.4  
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)             28   6.4  
SB_43173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)                 28   8.4  

>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 334 CTRWWPRAGESASACTVAPPWQRAPHSYR 248
           C+RWWPR   S  AC  AP   +A H+++
Sbjct: 618 CSRWWPRGRASRRAC--APTMPKASHTHQ 644


>SB_29437| Best HMM Match : POPLD (HMM E-Value=3.9)
          Length = 356

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 478 SAPHRAVLRCSSAAPAPSPRTRCTVSVTSHDVG 380
           SAP  A +    AAPAPSPRT    S+T+   G
Sbjct: 301 SAP--AKVHAEGAAPAPSPRTHAVHSMTAAGTG 331


>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 478 SAPHRAVLRCSSAAPAPSPRTRCTVSVTSHDVG 380
           SAP  A +    AAPAPSPRT    S+T+   G
Sbjct: 460 SAP--AKVHAEGAAPAPSPRTHAAHSMTAAGAG 490


>SB_43036| Best HMM Match : Chorion_3 (HMM E-Value=1.6)
          Length = 621

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 487 SVRSAPHRAVLRCSSAAPAPSPRTRCTVSVTSHDVGH 377
           S+ SAP  A +    AAPAPSPRT    S++     H
Sbjct: 567 SMDSAP--AKVHAEGAAPAPSPRTHAAHSMSGEKSDH 601


>SB_58932| Best HMM Match : POPLD (HMM E-Value=0.9)
          Length = 499

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 478 SAPHRAVLRCSSAAPAPSPRTRCTVSVTS 392
           SAP  A +    AAPAPSPRT    S+T+
Sbjct: 444 SAP--AKVHAEGAAPAPSPRTHAAHSMTA 470


>SB_18434| Best HMM Match : DUF646 (HMM E-Value=4.8)
          Length = 178

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -2

Query: 496 EPASVRSAPHRAVLRCSSAAPAPSPRTRCTVSVTS 392
           E  S  SAP  A +    AAPAPSPR     SVT+
Sbjct: 111 EVRSKASAP--AKVHAEGAAPAPSPRMHAAHSVTA 143


>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
          Length = 782

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 478 SAPHRAVLRCSSAAPAPSPRTRCTVSVTS 392
           SAP  A +    AAPAPSPRT    S+T+
Sbjct: 755 SAP--AKVHADGAAPAPSPRTHAAHSMTA 781


>SB_43173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 478 SAPHRAVLRCSSAAPAPSPRTRCTVSVTSHDVGH 377
           SAP  A +    AAPAPSPRT    S++     H
Sbjct: 366 SAP--AKVHAEGAAPAPSPRTHAAHSMSGEKSDH 397


>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
          Length = 1532

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 300 ADSPARGHHLVHE-LDRRCEPLLPLLPWPTSCEVTE-TVHRVRGEGAG 437
           A SP    H+    +DR+  P   L+  PTSC  T+  V R+RG   G
Sbjct: 788 ATSPYNTEHIRRSGMDRKNVPFNALIVGPTSCGKTQFVVDRLRGPFRG 835


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,003
Number of Sequences: 59808
Number of extensions: 224911
Number of successful extensions: 619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)