Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b22
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 357 PLLPLLPWPTSCEVT 401
           P +PLLP P SC  T
Sbjct: 649 PSMPLLPRPISCHTT 663


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 330 VHELDRRCEPLLPLLPWPTSCEVTE 404
           VH+    C+P +PL P  TS +VTE
Sbjct: 106 VHQAINTCQPSIPLEPDFTS-DVTE 129


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 216 QNNLTWWRYTVRYE 257
           QNN  WW+  + Y+
Sbjct: 19  QNNKGWWKNAIFYQ 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,505
Number of Sequences: 438
Number of extensions: 1769
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)