Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b22
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19440.1 68416.m02465 pseudouridine synthase family protein l...    31   0.74 
At2g05210.1 68415.m00549 expressed protein                             29   3.9  
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    27   9.1  

>At3g19440.1 68416.m02465 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 477

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 327 LVHELDRRCEPLLPLLPWPTSCEVTETVHRVRGEGAGA 440
           LVH LDR C  LL L    T+  V  ++ R +  GA A
Sbjct: 231 LVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASA 268


>At2g05210.1 68415.m00549 expressed protein
          Length = 364

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 108 HETIVYLPDAYPAHVAHLLADFSHRHHQVDWVLEEEQNNL 227
           +  IV +  AYP  V    +D + RHHQV   LE+    L
Sbjct: 248 YRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATL 287


>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 182 SVGEVSKKVCNVRRISIRQIDDCLVVRRAPCCV 84
           S+ ++   V N++R+ +  + DC V+   P CV
Sbjct: 737 SISQLPDNVGNLKRLVLLNMKDCKVLETIPTCV 769


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,909,533
Number of Sequences: 28952
Number of extensions: 135356
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)