Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b21
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322...    27   9.5  

>08_02_1482 -
           27428208-27428514,27428605-27428906,27431176-27432228,
           27432305-27432421,27432510-27432843,27433064-27433188,
           27433408-27433475,27433555-27433636,27433753-27433866,
           27433942-27434042,27434145-27434234,27434615-27434819
          Length = 965

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 381 RRKNSKAPSGDEISPATIFTVKILRRYVKKLLYR 280
           RR  S +P+G E++ A + ++K LRR  + +LY+
Sbjct: 845 RRSFSASPAGGELNSAVVSSLKNLRR-ERDMLYK 877


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,535
Number of Sequences: 37544
Number of extensions: 222109
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)