Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b21
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21605| Best HMM Match : DUF1043 (HMM E-Value=2)                     30   1.4  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              27   7.3  
SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_44066| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                27   9.6  

>SB_21605| Best HMM Match : DUF1043 (HMM E-Value=2)
          Length = 352

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 26/94 (27%), Positives = 40/94 (42%)
 Frame = -3

Query: 532 HTILNTVIDVRKQLNVFIQMGGLARAQQRRDGE*QN*MHSDYCSIILMRFSKKEF*SAFR 353
           H +    + + +Q++V   M  +A+ Q  R     N +  DY  I L R         F 
Sbjct: 225 HELYQDAVTIARQVDVQPDMPRVAQRQTHRPNAPPN-LLQDYYKINLTR--------VFL 275

Query: 352 *RNLAGYDIYRKDFT*VCKKITLPNNETNLSLMK 251
              L   D   KD   VC K+  P  +TN++L+K
Sbjct: 276 DHVLEQLDSRFKDDVFVCYKVKCPQRKTNVALLK 309


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 155 TCIRISNLCSNFLKACSCPPFKFVTKRI 238
           TC+ I  +  +  +ACS PPF  +TK++
Sbjct: 524 TCLSIDTILHDQARACSSPPFS-MTKQV 550


>SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 77  TCNIRACLLTNAKNSDCHV 21
           +C+   C +TN  N+DCHV
Sbjct: 304 SCHTTDCHVTNCHNTDCHV 322


>SB_44066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 169 NSNARVRSGSFDRVARHHDRKLSM*GIV*KRRVIFAPAYSRMRRTRTVTY 20
           N++ +   G+ DR+  +H R     GI  +   +    Y    R RT+TY
Sbjct: 28  NASGKHHQGTRDRIMTYHSRGKHHHGIQDRTMTLSLSRYHHGTRDRTMTY 77


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 298 KKITLPNNETNLSLMKYCSYYSFCYKFKWRTATR 197
           K I   N++    +   CSY    YK+K+ T TR
Sbjct: 532 KAIEKVNSKETSHIASVCSYRYLSYKYKYNTFTR 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,152
Number of Sequences: 59808
Number of extensions: 277654
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)