Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b21
(534 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-757|AAM71094.1| 622|Drosophila melanogaster CG8224-PB,... 28 7.0
U37018-1|AAC46920.1| 1389|Drosophila melanogaster TIM protein. 28 9.2
AY058278-1|AAL13507.1| 790|Drosophila melanogaster GH03106p pro... 28 9.2
AF032401-1|AAB94890.1| 1398|Drosophila melanogaster circadian cl... 28 9.2
AE014134-621|AAN10372.2| 914|Drosophila melanogaster CG3234-PC,... 28 9.2
AE014134-620|ABC65862.1| 1122|Drosophila melanogaster CG3234-PF,... 28 9.2
AE014134-619|AAX52649.1| 1122|Drosophila melanogaster CG3234-PE,... 28 9.2
AE014134-618|AAF51098.4| 1398|Drosophila melanogaster CG3234-PB,... 28 9.2
AE014134-617|AAN10371.2| 1421|Drosophila melanogaster CG3234-PD,... 28 9.2
AE014134-616|AAF51097.1| 1389|Drosophila melanogaster CG3234-PA,... 28 9.2
>AE013599-757|AAM71094.1| 622|Drosophila melanogaster CG8224-PB,
isoform B protein.
Length = 622
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 122 TRNPIERSGSHTCIRISNLCSNFL 193
T P+ R+G+H C + + C+ FL
Sbjct: 189 TARPVGRNGAHACCKDRDFCNRFL 212
>U37018-1|AAC46920.1| 1389|Drosophila melanogaster TIM protein.
Length = 1389
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 735 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 778
>AY058278-1|AAL13507.1| 790|Drosophila melanogaster GH03106p
protein.
Length = 790
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 643 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 686
>AF032401-1|AAB94890.1| 1398|Drosophila melanogaster circadian clock
protein protein.
Length = 1398
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 744 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 787
>AE014134-621|AAN10372.2| 914|Drosophila melanogaster CG3234-PC,
isoform C protein.
Length = 914
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 767 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 810
>AE014134-620|ABC65862.1| 1122|Drosophila melanogaster CG3234-PF,
isoform F protein.
Length = 1122
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 735 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 778
>AE014134-619|AAX52649.1| 1122|Drosophila melanogaster CG3234-PE,
isoform E protein.
Length = 1122
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 735 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 778
>AE014134-618|AAF51098.4| 1398|Drosophila melanogaster CG3234-PB,
isoform B protein.
Length = 1398
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 744 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 787
>AE014134-617|AAN10371.2| 1421|Drosophila melanogaster CG3234-PD,
isoform D protein.
Length = 1421
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 767 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 810
>AE014134-616|AAF51097.1| 1389|Drosophila melanogaster CG3234-PA,
isoform A protein.
Length = 1389
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +2
Query: 386 SHQYYR-AVVRMHLVLLFT-VAALLGSCQSAHLNKHIKLLSDID 511
S QY + VV H++LL +A LG CQ+ L++HI + ++
Sbjct: 735 SKQYLQDLVVTNHILLLILDSSAKLGGCQTIRLSEHITQFATLE 778
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,031,725
Number of Sequences: 53049
Number of extensions: 392047
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -