Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b19
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    29   0.64 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    28   0.84 
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    26   3.4  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   6.0  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   7.9  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   7.9  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   7.9  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +2

Query: 200 YTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTSPHVHR 379
           Y QL + Y P+  +   Q+    +   + N Y P + S++ +EI       ++T      
Sbjct: 281 YEQLHDKYFPNLPVDEKQMQWLHDPSPAENSYHPSVESLHAHEIRFGFKGEIITPSQSQT 340

Query: 380 VEVPEVKPQH 409
           + V E    H
Sbjct: 341 IPVNEGLHHH 350


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
 Frame = +2

Query: 191 TNGYTQLSNTYTPSKNIPCN--QLATAQNYVASNNQYQPLISSINPNEIVKVILSRVLTS 364
           T  +T L+N +  S++ P +  QL T  +   S    Q      NP ++        L+S
Sbjct: 100 TGSFTPLNNKHLKSQDQPLSDSQLDTGDSPATSETTVQ----DYNP-QVQSYCRPEPLSS 154

Query: 365 PHVHRVEVPEVKPQHNPDAKEPINTNVPHVVNNYF 469
            HV           H+P  + P +   PH  NN +
Sbjct: 155 NHVRSCPPFPPTQHHHPHTRPPHHPPHPHFHNNNY 189


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 397 YFWNFNSVDMRTCQNSAQYDLDDFV 323
           YFW+     +R C N+A    DD V
Sbjct: 490 YFWSAQGKQLRYCGNNAAEGFDDVV 514


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +2

Query: 278 ASNNQYQPLISSINPNEIVKVILSRVLTSPHVHRVEVP 391
           ASN QY P  S IN N  V+V       S   H    P
Sbjct: 84  ASNAQYYPAYSVINGNNSVQVASPAYTVSHSPHSFSNP 121


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 475 YNKIIVDNVWHISVYWFLCVRIVLRLY 395
           YNK + D VW    Y    V+ + RLY
Sbjct: 40  YNKKVNDGVWKRDPYQETAVKAINRLY 66


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 227 PSKNIPCNQLATAQNYVASNNQYQPLISSINPNEIVKVILS-RVLTSPHVHRVEVPEVKP 403
           P  NIP N      NY  S+   +    S+  + IV    S +   S H H    P + P
Sbjct: 98  PENNIPPND----NNYSISDLSIKSPPPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPP 153

Query: 404 QHNPDA 421
            H P+A
Sbjct: 154 PHLPNA 159


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 188 QTNGYTQLSNTYTPSKNIPCNQLATAQNYVASNNQYQPLISSINPNEI 331
           Q +GY +  +T TP+   P  +    Q+ +     +  +  S++P E+
Sbjct: 389 QVDGYDEPLSTTTPTLIEPIQETLMTQSPIIECEPFNTVKPSVSPEEV 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,465
Number of Sequences: 5004
Number of extensions: 35400
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)