Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b19
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    30   1.3  
AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical...    29   2.3  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   7.2  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   7.2  

>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 448 WHISVYWFLCVRIVLRLYFWNFNSVD 371
           WHI  Y F C+ + L L  W +   D
Sbjct: 143 WHILAYLFFCIVLPLSLLVWAYQDAD 168


>AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical
           protein Y54G2A.28 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +2

Query: 263 AQNYVASNNQYQPLISSI-----NPNEIVKVILSRVLTSPHVHRVEVPEVK---PQHNPD 418
           AQ Y+ S+  +QP +S I     + +EI K +   ++ +P      VPE     PQH   
Sbjct: 206 AQGYLVSSTYHQPFVSMIRQKKAHTSEIQKALQRPLVATPRKPFKYVPEFNFGYPQHPNF 265

Query: 419 AKEPINTNV 445
            +  +N NV
Sbjct: 266 QQLDLNNNV 274


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 80    IVFIVKNSKRSIDYTIAVKT 21
             IV IVKN K S DY+ AVK+
Sbjct: 12269 IVLIVKNGKASDDYSSAVKS 12288


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -1

Query: 80    IVFIVKNSKRSIDYTIAVKT 21
             IV IVKN K S DY+ AVK+
Sbjct: 12269 IVLIVKNGKASDDYSSAVKS 12288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,291
Number of Sequences: 27780
Number of extensions: 190746
Number of successful extensions: 566
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)