Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b18
(764 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 290 8e-79
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 146 1e-35
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 146 1e-35
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 107 6e-24
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 107 1e-23
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 100 9e-22
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 99 2e-21
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 96 2e-20
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 96 3e-20
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 81 8e-16
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 81 1e-15
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 62 4e-10
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 60 1e-09
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 60 1e-09
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 52 6e-07
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 47 2e-05
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 45 5e-05
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 44 8e-05
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 42 4e-04
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 41 0.001
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 40 0.002
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 40 0.002
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 39 0.003
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 39 0.004
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 39 0.004
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 39 0.004
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 38 0.006
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 38 0.007
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 38 0.010
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 38 0.010
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 38 0.010
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 37 0.013
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 37 0.013
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 37 0.013
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 37 0.013
At5g55490.1 68418.m06911 expressed protein 36 0.022
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.039
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 35 0.068
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 35 0.068
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 34 0.090
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 33 0.16
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 33 0.16
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 33 0.21
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 33 0.21
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.64
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.64
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 31 0.84
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 31 1.1
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /... 30 1.9
At5g32169.1 68418.m03692 hypothetical protein 30 1.9
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 29 2.6
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 29 2.6
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea... 29 2.6
At1g56610.1 68414.m06511 syntaxin-related family protein similar... 29 2.6
At5g36780.1 68418.m04406 hypothetical protein 29 3.4
At5g36690.1 68418.m04391 hypothetical protein 29 3.4
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 4.5
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 29 4.5
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 28 5.9
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 28 5.9
At1g58120.1 68414.m06589 expressed protein 28 5.9
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 7.8
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 7.8
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 7.8
At1g77890.1 68414.m09078 expressed protein 28 7.8
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 28 7.8
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 28 7.8
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 290 bits (711), Expect = 8e-79
Identities = 137/170 (80%), Positives = 153/170 (90%)
Frame = +1
Query: 253 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 432
+ EDLY + K L+R LEF ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E
Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85
Query: 433 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 612
VDQN GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L
Sbjct: 86 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145
Query: 613 ADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
EKPDV Y+DIGG D QKQEIREAVELPLTH ELY+QIGI+PPRGVL+Y
Sbjct: 146 QSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLY 195
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 146 bits (354), Expect = 1e-35
Identities = 73/185 (39%), Positives = 120/185 (64%), Gaps = 7/185 (3%)
Frame = +1
Query: 229 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 387
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 388 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 567
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 568 DVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 747
+L E D +S+++ ++ P Y+DIGG++ Q QEI+EAVELPLTH ELY IGI+PP+
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
Query: 748 GVLMY 762
GV++Y
Sbjct: 224 GVILY 228
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 146 bits (354), Expect = 1e-35
Identities = 73/185 (39%), Positives = 120/185 (64%), Gaps = 7/185 (3%)
Frame = +1
Query: 229 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 387
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 388 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 567
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 568 DVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPR 747
+L E D +S+++ ++ P Y+DIGG++ Q QEI+EAVELPLTH ELY IGI+PP+
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPK 223
Query: 748 GVLMY 762
GV++Y
Sbjct: 224 GVILY 228
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 107 bits (258), Expect = 6e-24
Identities = 53/164 (32%), Positives = 96/164 (58%)
Frame = +1
Query: 271 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 450
++Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 SEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 451 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 630
IV +++G Y V S +D+E L V L + ++ LP E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 631 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
+ YS +GG+ Q +E+RE++ELPL + EL+ ++GI+PP+GVL+Y
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 179
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 107 bits (256), Expect = 1e-23
Identities = 54/164 (32%), Positives = 95/164 (57%)
Frame = +1
Query: 271 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 450
T Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 TDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 451 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 630
IV +++G Y V S +D+E L V L + ++ LP E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 631 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
+ YS +GG+ Q +E+RE++ELPL + EL+ ++GI+PP+GVL+Y
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLY 179
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 100 bits (240), Expect = 9e-22
Identities = 56/202 (27%), Positives = 108/202 (53%), Gaps = 21/202 (10%)
Frame = +1
Query: 220 AFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 399
+F G Q + ++D+ + L + L+ + + + ++K++ QE++K +
Sbjct: 10 SFEGDQ-LASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQ 68
Query: 400 VPLVIGQFLEAVD------------------QNTG---IVGSTTGSNYYVRILSTIDREL 516
+P ++G +E ++ Q G ++ ++T ++ ++ +D +
Sbjct: 69 LPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDT 128
Query: 517 LKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVEL 696
LKP V ++K S ++D LP E DS + ++ DEKP Y+DIGG++ Q QE+ EA+ L
Sbjct: 129 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVL 188
Query: 697 PLTHVELYRQIGIEPPRGVLMY 762
P+TH E + ++GI PP+GVL+Y
Sbjct: 189 PMTHKEQFEKLGIRPPKGVLLY 210
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 99 bits (238), Expect = 2e-21
Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 21/192 (10%)
Frame = +1
Query: 250 LESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 429
+ +ED+ + L + L+ + E + K++ QE++K + +P ++G +E
Sbjct: 20 MSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVE 79
Query: 430 AVDQNTG---------------------IVGSTTGSNYYVRILSTIDRELLKPSASVALH 546
++ N ++ ++T ++ ++ +D + LKP V ++
Sbjct: 80 ILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVN 139
Query: 547 KHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQ 726
K S ++D LP E DS + ++ DEKP Y+DIGG++ Q QE+ EA+ LP+TH E + +
Sbjct: 140 KDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEK 199
Query: 727 IGIEPPRGVLMY 762
+G+ PP+GVL+Y
Sbjct: 200 LGVRPPKGVLLY 211
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 96.3 bits (229), Expect = 2e-20
Identities = 51/160 (31%), Positives = 86/160 (53%)
Frame = +1
Query: 283 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 462
+LQR+ ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 463 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYS 642
Y V I +ID L PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 643 DIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
IGG+D Q +EI+E +ELP+ H EL+ +GI P+GVL+Y
Sbjct: 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLY 201
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 95.9 bits (228), Expect = 3e-20
Identities = 51/160 (31%), Positives = 86/160 (53%)
Frame = +1
Query: 283 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 462
+LQR L ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 463 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYS 642
Y V I +ID + PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 643 DIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
IGG+D Q +EI+E +ELP+ H EL+ +GI P+GVL+Y
Sbjct: 162 MIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLY 201
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 81.0 bits (191), Expect = 8e-16
Identities = 34/63 (53%), Positives = 47/63 (74%)
Frame = +1
Query: 574 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 753
LPP+ D S++M+ +EKPD YSDIGG Q ++IRE VELP+ H E + ++GI+PP+GV
Sbjct: 183 LPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGV 242
Query: 754 LMY 762
L Y
Sbjct: 243 LCY 245
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 80.6 bits (190), Expect = 1e-15
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 5/200 (2%)
Frame = +1
Query: 178 LPEKDDQVTDSKGLA-FAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLK 354
L E D + + GL ++ P E E +DL KK+ + E Q +L
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLA---KKINDLCGIKESDTGLAPPSQWDLV 74
Query: 355 KEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG----IVGSTTGSNYYVRILSTIDRELLK 522
+ QEE PL + + + + NT ++ + + V + + ++
Sbjct: 75 SDKQMMQEEQ------PLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIE 128
Query: 523 PSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPL 702
V + ++ + LPP+ D S++M+ +EKPDV Y+D+GG Q +++RE VELP+
Sbjct: 129 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPM 188
Query: 703 THVELYRQIGIEPPRGVLMY 762
H E + ++GI+PP+GVL Y
Sbjct: 189 LHPEKFVKLGIDPPKGVLCY 208
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 62.1 bits (144), Expect = 4e-10
Identities = 24/45 (53%), Positives = 35/45 (77%)
Frame = +1
Query: 628 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
DV Y D+GG+ Q +IRE VELPL H +L++ IG++PP+G+L+Y
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLY 247
Score = 55.2 bits (127), Expect = 5e-08
Identities = 30/88 (34%), Positives = 50/88 (56%)
Frame = +1
Query: 499 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEI 678
+ID E+L A H H+ AL + P ++ E P+V ++DIGG++ K+E+
Sbjct: 439 SIDAEILNSMAVTNEHFHT-ALGNSNPSALRETVV-----EVPNVSWNDIGGLENVKREL 492
Query: 679 REAVELPLTHVELYRQIGIEPPRGVLMY 762
+E V+ P+ H E + + G+ P +GVL Y
Sbjct: 493 QETVQYPVEHPEKFEKFGMSPSKGVLFY 520
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +1
Query: 628 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
+V Y D+GG+ Q +IRE VELPL H +L++ IG++PP+G+L+Y
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLY 247
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = +1
Query: 499 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEI 678
+ID E+L A H H+ AL + P ++ E P+V + DIGG++ K+E+
Sbjct: 439 SIDAEILNSMAVSNEHFHT-ALGNSNPSALRETVV-----EVPNVSWEDIGGLENVKREL 492
Query: 679 REAVELPLTHVELYRQIGIEPPRGVLMY 762
+E V+ P+ H E + + G+ P +GVL Y
Sbjct: 493 QETVQYPVEHPEKFEKFGMSPSKGVLFY 520
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 60.5 bits (140), Expect = 1e-09
Identities = 23/45 (51%), Positives = 35/45 (77%)
Frame = +1
Query: 628 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
+V Y D+GG+ Q +IRE VELPL H +L++ IG++PP+G+L+Y
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLY 248
Score = 52.8 bits (121), Expect = 2e-07
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
E P+V + DIGG++ K+E++E V+ P+ H E + + G+ P +GVL Y
Sbjct: 474 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFY 521
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 51.6 bits (118), Expect = 6e-07
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
E P V + D+GG + K ++ EAVE P H + +++IG PP G+LM+
Sbjct: 717 EVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILMF 764
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/48 (37%), Positives = 33/48 (68%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
E P V + D+GG+ K+++++AVE P+ H + ++GI P RG+L++
Sbjct: 279 EIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLH 326
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 583 EADSSI-SMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
E +SS+ + +EK + ++IGG + Q +RE + P + R +G++ PRG+L+
Sbjct: 3 ETESSVCDNIAGNEKWRAE-AEIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLL 61
Query: 760 Y 762
Y
Sbjct: 62 Y 62
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +1
Query: 601 SMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
S L A + P+V++ D+GG++ K I + V+LPL H +L+ G+ GVL+Y
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSS-GLRKRSGVLLY 697
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 592 SSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
+ I LQ +E D+ + DIGG+ +++E V PL + E + I PPRGVL+
Sbjct: 367 ADIQPLQINE--DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLL 420
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 631 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
+ ++D+ G+D K+E+ E VE L + E Y ++G PPRGVL+
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLL 363
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +1
Query: 631 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
+ ++D+ G+D K+E+ E VE L + + Y ++G PPRGVL+
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLL 367
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/44 (36%), Positives = 30/44 (68%)
Frame = +1
Query: 631 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
V ++DIG +D K+ ++E V LPL +L++ ++P RG+L++
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLF 454
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 562 LVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVEL--YRQIGI 735
LV P E + ++ D DV++ IGG++T KQ + E V LPL EL Y ++ +
Sbjct: 59 LVQTNPYEDVIACDVINPDHI-DVEFGSIGGLETIKQALYELVILPLKRPELFAYGKL-L 116
Query: 736 EPPRGVLMY 762
P +GVL+Y
Sbjct: 117 GPQKGVLLY 125
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +1
Query: 610 QADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
+ D V+++D+ G+D E++E V+ L + +L+ ++GI+PP GVL+
Sbjct: 420 RVDGSTGVKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLL 468
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/44 (36%), Positives = 30/44 (68%)
Frame = +1
Query: 628 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
DV+++D+ G+ + E+ E V+ TH E+YR+ G++ P G+L+
Sbjct: 406 DVKFTDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVKIPGGILL 448
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
E+ +V + DIG +D K+ ++E V LPL +L+ ++P RG+L++
Sbjct: 514 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLF 561
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
E+ +V + DIG +D K+ ++E V LPL +L+ ++P RG+L++
Sbjct: 509 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLF 556
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 625 PDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
PDV++ D+GG+D + + + P+ ++Y+ G++ G L+Y
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLY 568
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 637 YSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
+ D GG+ E+ V P+ + E +++IG++PP G+L +
Sbjct: 232 FKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFH 273
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGV 753
EKP+V+++ + G+++ KQ ++EAV LP+ + + I PR V
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFFTARAIYDPRDV 130
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 628 DVQYSDIGGMDTQKQEIREAVELPLTHVEL--YRQIGIEPPRGVLMY 762
DV++ IGG+++ KQ + E V LPL EL Y ++ + P +GVL+Y
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKL-LGPQKGVLLY 128
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 637 YSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
+ + G++ Q ++E V +PL + E + +G+ PPRG+L++
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLH 759
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
EKP++++SD+ G+++ KQ ++EAV LP+ + + P R L+Y
Sbjct: 125 EKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTG-KRRPWRAFLLY 171
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 577 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVL 756
P + S + Q + V + D+ G+D KQ+ E VE L E + +G + P+GVL
Sbjct: 206 PLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVL 264
Query: 757 M 759
+
Sbjct: 265 L 265
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 616 DEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
D P V++ D+ G+ K+ + EAV LPL E ++ I P +GVLM+
Sbjct: 231 DSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIR-RPWKGVLMF 278
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 37.1 bits (82), Expect = 0.013
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 3/180 (1%)
Frame = +1
Query: 160 EEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDE 339
E + L D+V D+ G+ L SED ++ K R LE+LE+QEE IK+E
Sbjct: 463 EAVQATLSSLPDEVVDTVGVT--------ALSSEDSVSERK---RKLEYLEMQEELIKEE 511
Query: 340 QRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELL 519
+ ++E +E + V L A D N T + + LS +L
Sbjct: 512 EEEEEEEMAKMKESASSQKDVALDEMMASTAKDANEQAKAKTLEKHEQLCELSRA-LAVL 570
Query: 520 KPSASVALHKHSNALVDVLPPEADSSISMLQ---ADEKPDVQYSDIGGMDTQKQEIREAV 690
++SV++ + + ++ E D SM++ D++ D + + + + + ++A+
Sbjct: 571 ASASSVSMEREE--FLKLVKKEVDLYNSMVEKGGTDDEEDARKAYLAAREDSDRSAQKAI 628
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 577 PPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVL 756
P + S + Q + V + D+ G+D KQ+ E VE L E + +G P+GVL
Sbjct: 199 PLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVL 257
Query: 757 M 759
+
Sbjct: 258 L 258
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 36.3 bits (80), Expect = 0.022
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 184 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 363
+K ++ D + +A G Q +SE L LQR+ EF + Q+E + Q L++ +
Sbjct: 269 DKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQRLKEFSQEQQEDLAKRQEKLQEVH 328
Query: 364 LHAQEEVK 387
H E K
Sbjct: 329 DHLFENSK 336
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 631 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMY 762
V +SDIG ++ K ++E V LPL EL+ + + +P +G+L++
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLF 991
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 34.7 bits (76), Expect = 0.068
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 595 SISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
S + Q + + + D+ G+D KQ+ E VE L E + +G + P+GVL+
Sbjct: 208 SKAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLL 261
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 631 VQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMY 762
V + DIG ++ K+ ++E V LPL EL+ + + +P +G+L++
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLF 1004
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 34.3 bits (75), Expect = 0.090
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +1
Query: 547 KHSNALVDVLPPEADSS-ISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY- 720
K S L ++ E + + +S + A + V++ DIG ++ K+ + E V LP+ EL+
Sbjct: 319 KPSQNLKNIAKDEYERNFVSAVVAPGEIGVKFEDIGALEDVKKALNELVILPMRRPELFA 378
Query: 721 RQIGIEPPRGVLMY 762
R + P +G+L++
Sbjct: 379 RGNLLRPCKGILLF 392
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 628 DVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMY 762
DV + DIG ++ K ++E V LPL EL+ + + +P +G+L++
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLF 861
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +1
Query: 619 EKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY 720
EKP+V+++ + G+++ KQ ++EAV LP+ + +
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 598 ISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELY-RQIGIEPPRGVLMY 762
+S + A + V++ DIG ++ K+ + E V LP+ EL+ R + P +G+L++
Sbjct: 136 VSAVVAPGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLF 191
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 454 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDV 633
+ S G++ VR++ ++ E LK + + +L D++ E IS + + V
Sbjct: 676 IKSNPGADPDVRVILSL--ESLKCGIELLEIESKKSLKDIVT-ENTFEISDIIPPSEIGV 732
Query: 634 QYSDIGGMDTQKQEIREAVELPLTHVELYRQIGI-EPPRGVLMY 762
+ DIG ++ K ++E V LP EL+ + + +P G+L++
Sbjct: 733 TFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLF 776
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/50 (24%), Positives = 32/50 (64%)
Frame = +1
Query: 247 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 396
+++ ++ K L++ +++ E++++ IKD+ L++E + EE+ RI+
Sbjct: 720 QMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIK 769
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 247 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 393
E E E L K KL E E+Q + D +LK + HAQEE +R+
Sbjct: 380 EGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRL 428
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 247 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFL 426
E E + L + KL + E L V+ + + L++E HAQ+ KR+ S L +
Sbjct: 292 ETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKI 351
Query: 427 EAVDQNTGIVGS 462
+ V++ ++ S
Sbjct: 352 KTVEEQCALLES 363
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +1
Query: 148 IETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY 327
++ + + L D+V D+ G+ L SED ++ + R LE+LE+QEE
Sbjct: 480 VKAEDAVRATLSSLPDEVVDTVGIT--------SLPSEDPVSERR---RKLEYLEMQEEL 528
Query: 328 IKDEQRNLKKEYLHAQEEVKRIQSV 402
IK+E+ +KE +EE+ RI+ V
Sbjct: 529 IKEEE---EKE----EEELTRIKDV 546
>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
and to SEC14 cytosolic factor (SP:P53989) [Candida
glabrata]
Length = 376
Score = 29.9 bits (64), Expect = 1.9
Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
Frame = +1
Query: 127 STRNLLAIETMEEIGIILPEKDDQVTDSKGLA-FAGPQSFDELESEDLYTKYKKLQRMLE 303
S N +E + ++ D+ D L F + FD +S++ + Y K + +
Sbjct: 21 SPNNEEMVEAFRNLLLLHGHLPDKHGDHNTLRRFLKMRDFDLEKSKEAFLNYMKWRVDYK 80
Query: 304 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGS--N 477
+ +++ +E +KK Y H +V + P+ I + L D N + +T N
Sbjct: 81 VDLISQKFKFEEYGEVKKHYPHGFHKVDK-TGRPIYI-ERLGMTDLNAFLKATTIERYVN 138
Query: 478 YYVRILSTIDRELLKPSASVALHKHSNALVDVL 576
Y+++ L P+ S+A KH ++ +L
Sbjct: 139 YHIKEQEK-TMSLRYPACSIASDKHVSSTTTIL 170
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -3
Query: 375 LCMQIFFLQVSLFIFNVLFLY 313
LC ++F +++SL++F++ FLY
Sbjct: 204 LCSRLFVIRISLYLFSIQFLY 224
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 613 ADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMY 762
A E + + D+GG+ K I+E +ELP +++ + + VL+Y
Sbjct: 835 ASEGGRLGWEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLY 884
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 607 LQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLM 759
+Q ++SD+ G+D K E+ E V L + + ++G + P+GVL+
Sbjct: 216 VQPSMDSSTKFSDVKGVDEAKAELEEIVHY-LRDPKRFTRLGGKLPKGVLL 265
>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P35579 myosin heavy chain,
nonmuscle type A (Cellular myosin heavy chain, type A,
Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
Length = 629
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/71 (21%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +1
Query: 160 EEIG--IILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY-- 327
E++G ++L +++++ + + A Q DEL+ L +K++ ++E ++++EY
Sbjct: 387 EKVGALLLLSQQEERHLHEENVNAALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQS 446
Query: 328 IKDEQRNLKKE 360
++D+ ++E
Sbjct: 447 LRDKMSGTREE 457
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
proteins At3g54160, At1g47920 (syntaxin SYP81),
At5g41830, At3g44180, At3g58890, At1g48390, At3g59270
[Arabidopsis thaliana]; contains a novel domain similar
to F-box that is shared among other proteins in
Arabidopsis
Length = 535
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -3
Query: 396 LYALYFFLCMQ--IFFLQVSLFIFN--VLFLYF*EL*HSLEFLVLCV*IFRFEFIKRLRT 229
L+ Y FL IF + F+++ VL L L ++ L+LC +F F F++
Sbjct: 10 LFGFYLFLMKSSSIFPQRPFTFLYDLWVLLLVLRFLFSLIQILILC--LFNFRFVEMTSN 67
Query: 228 SKRQAF*VCDL 196
+K++ +CDL
Sbjct: 68 NKKKKTELCDL 78
>At5g36780.1 68418.m04406 hypothetical protein
Length = 576
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +1
Query: 151 ETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELES-----EDLYTKYKKLQRMLEFLEV 315
ET + GIIL EK+ + K +A + +EL++ DL K K Q + L++
Sbjct: 194 ETEKPDGIILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIRVLDL 253
Query: 316 QEEYIKDEQRNLKKEYLHAQEEVKRIQ 396
++ +I + K++ +A+ ++ RIQ
Sbjct: 254 EKAHILE-----KRDRFYARIKMLRIQ 275
>At5g36690.1 68418.m04391 hypothetical protein
Length = 576
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +1
Query: 151 ETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELES-----EDLYTKYKKLQRMLEFLEV 315
ET + GIIL EK+ + K +A + +EL++ DL K K Q + L++
Sbjct: 194 ETEKPDGIILSEKEASINRVKSMALELNEVKNELDAITWKINDLSDKLWKSQNNIRVLDL 253
Query: 316 QEEYIKDEQRNLKKEYLHAQEEVKRIQ 396
++ +I + K++ +A+ ++ RIQ
Sbjct: 254 EKAHILE-----KRDRFYARIKMLRIQ 275
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = +1
Query: 127 STRNLLAIETMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEF 306
S + L ++ EE+ + +K + + ++ L + E E E + K ++L++ E+
Sbjct: 521 SELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKF--EAEWEHIDVKREELRKEAEY 578
Query: 307 LEVQEE----YIKDEQRNLKKE 360
+ Q E Y+KDE+ N+K+E
Sbjct: 579 ITRQREAFSMYLKDERDNIKEE 600
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 274 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 453
K +Q EFL +Q + E +L+K + +E +R+Q + + LE +++G+
Sbjct: 647 KLSSIQDENEFLRMQAIQNRAEMESLQKSLSFSLDEKERLQKLVDNLSNELEGKIRSSGM 706
Query: 454 VG 459
VG
Sbjct: 707 VG 708
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/51 (25%), Positives = 33/51 (64%)
Frame = +1
Query: 244 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 396
D LE ++ ++ +K+ + LE+ +EY++D +R +++ +EE+K+++
Sbjct: 581 DRLEVDERCSRLEKIDQ----LEIFQEYLRDLEREEEEKKKIQKEELKKVE 627
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 460 STTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPP 582
+TT ++Y+R L+ + ++ KP+ S + +N +D+ PP
Sbjct: 25 NTTNRDHYLRQLNKLSHKISKPTNSSSSVSVANREIDLPPP 65
>At1g58120.1 68414.m06589 expressed protein
Length = 420
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 235 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 414
Q F+ + E + + + E +E +K+E+ + K EE+ R +S+ +V
Sbjct: 313 QKFEMYKIETVNDEMSLESEKMGMTEWLKENVKEEEYVVMKAEAEMVEEMMRSKSIKMVD 372
Query: 415 GQFLEAVDQNTGIVG 459
FLE + G+ G
Sbjct: 373 ELFLECKPKGLGLRG 387
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 478 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSIS 603
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 478 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSIS 603
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 304 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 414
FLEV Y++++++ L+KE + + V+ P+VI
Sbjct: 106 FLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVI 142
>At1g77890.1 68414.m09078 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 247 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 363
EL++E L +KLQ +E L+ + + RNLK+ Y
Sbjct: 66 ELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERY 104
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 244 DELESEDLYTKYKKLQRMLEFL-EVQEEYIKDEQRNLKKEYLHAQEEVK 387
+ +++ +K + L + LE + E QE+ K +QRNL+K + ++K
Sbjct: 67 ERIQNPSASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLK 115
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 253 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 429
E ED K ++ ++ E + +EE K E+ N KKE +EEVK ++ I Q +E
Sbjct: 189 EEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVK-VEVTTKTITQVVE 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,103,810
Number of Sequences: 28952
Number of extensions: 293301
Number of successful extensions: 1005
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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