Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12b15
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           27   0.073
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           27   0.073
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    26   0.17 
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           25   0.29 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.39 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.51 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    25   0.51 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    25   0.51 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   0.68 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   0.68 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   0.68 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   1.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   6.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.4  

>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 27.5 bits (58), Expect = 0.073
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 201 KLQDLVPFMPKNRKISKLEVIQHVIDY 281
           +L+D+VP +  +RK+SK E +Q    Y
Sbjct: 19  RLRDVVPSLGNDRKLSKFETLQMAQTY 45


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 0.073
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 234 NRKISKLEVIQHVIDYICDLQSALENH 314
           ++K+SK+E ++  ++YI  L+  +E+H
Sbjct: 132 SKKLSKVETLRLAVEYIRSLKQMIEDH 158


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 347 LSVATLRSVAAAPPSEETARPSPYAQTPSSANHPPH 454
           +S + + S AAAPP   T+  SP A   S+A+ P H
Sbjct: 22  ISSSGMTSPAAAPPPATTSSGSP-ASVASNASAPLH 56


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 234 NRKISKLEVIQHVIDYICDLQSAL 305
           N+K+SK+E ++  ++YI  L+  L
Sbjct: 95  NKKLSKVETLRMAVEYIRSLEDLL 118


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 368 SVAAAPPSEETARPSP-YAQTPSS 436
           + + APP EE A P+P    TPSS
Sbjct: 42  AASPAPPEEEAASPTPGDVPTPSS 65



 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 368 SVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKT 490
           +V   P   +   P P   +PS+ N    T++ N   P  +
Sbjct: 406 NVPVPPMQSQIINPQPQITSPSNTN--TSTSSTNSNKPNSS 444


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 23  RLTRIALRLYIFTQCSCSVTQDESDNSSV 109
           R+TR  LR  + T  S SVT+D+  +SSV
Sbjct: 30  RVTRRRLRRPLKTTQSVSVTKDQDVSSSV 58


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 389 SEETARPSPYAQTPSSANHPPHTNTENQTAP 481
           S  T  P+ Y+ +  S + P H+++   T+P
Sbjct: 26  SATTEAPAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 0.51
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 389 SEETARPSPYAQTPSSANHPPHTNTENQTAP 481
           S  T  P+ Y+ +  S + P H+++   T+P
Sbjct: 26  SATTEAPAAYSSSSPSGSSPQHSSSSASTSP 56


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 246 RSFYSWA*RVRDPGASRGTF 187
           R  Y W  +V   GAS GTF
Sbjct: 208 RQIYPWMRKVHVAGASNGTF 227


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 246 RSFYSWA*RVRDPGASRGTF 187
           R  Y W  +V   GAS GTF
Sbjct: 208 RQIYPWMRKVHVAGASNGTF 227


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 246 RSFYSWA*RVRDPGASRGTF 187
           R  Y W  +V   GAS GTF
Sbjct: 208 RQIYPWMRKVHVAGASNGTF 227


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 57  LPSVRVQ*LKMKAITAVCATGASVPAIA 140
           +P +++Q  + +++TA+  TG+ V  I+
Sbjct: 87  VPEIKIQISQQQSVTALLDTGSEVSCIS 114


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 380 APPSEETARPSPYAQTPSSANHPPHTNTEN 469
           +P S++ + PSP      + N    T TEN
Sbjct: 411 SPGSDQRSTPSPRVYGNVNENQDCSTPTEN 440


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 211 SWSFERYICISAFSPSRC 158
           +W     IC+SA++P  C
Sbjct: 477 TWMPVMRICVSAWNPKDC 494


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 386 PSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKP 496
           P +ET   + Y   P S + P   ++ N    +  KP
Sbjct: 213 PPQETPVLASYKSVPMSFSSPRRRHSINLLEEDNQKP 249


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 93  AITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSK 203
           A+T     G    +I    V + + G N EI MY+ +
Sbjct: 202 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRR 238


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 160 CRCTRPLAIAGTEAP 116
           CR  R L +AGT +P
Sbjct: 251 CRDNRLLVLAGTSSP 265


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 423 KHHPPQITLHTRTQKIKRHQKK 488
           K HPPQ T     Q+ +R   K
Sbjct: 50  KSHPPQWTWQCINQRCERRHIK 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,527
Number of Sequences: 336
Number of extensions: 1716
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)