Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b15
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 28 0.92
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 1.6
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 2.1
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ... 26 3.7
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 3.7
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 26 3.7
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 4.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 4.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 6.5
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 6.5
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 25 6.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 6.5
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 8.6
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 8.6
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 8.6
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.9 bits (59), Expect = 0.92
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 153 QRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 305
Q + N+E Q S ++L + KN + E+ +IDY+CD +AL
Sbjct: 333 QAAKAANNSEKQALDSACKELREAVLKNTSVPH-ELANSIIDYVCDALAAL 382
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -2
Query: 250 LEIFLFLGMKGTRSWSFERYICISAFSPSRCRCTRPLAIAGTEAPVAHTAVIA 92
L FL G +G ++ ICI +C+ P+ +AG E + A IA
Sbjct: 1297 LHEFLVQGYQGVDMHTYHNIICILIEKAEKCK-DEPVILAGIEDNITLIAEIA 1348
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 371 VAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAP 481
V + PP T P+ + P +HPPH + N P
Sbjct: 157 VRSCPPFPPTQHHHPHTRPP---HHPPHPHFHNNNYP 190
>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 496 WFCFFWCRLIFCVRVWRVICG 434
W CF C +I CV V V+CG
Sbjct: 255 WICFGICVVIICVIV-AVLCG 274
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 319 LLDNLTLKAP*RRHLAQRRRSP 384
LLDN+ KAP +R+LA +P
Sbjct: 102 LLDNIKRKAPSKRNLANENTAP 123
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 126 VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN 236
+ A SG DG NA + Y++ +LV F+PKN
Sbjct: 77 IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 389 SEETARPSPYAQTPSSANHPPHTN 460
S A SP + T S+A HP HTN
Sbjct: 86 SAAPASSSPTSATLSTAAHPVHTN 109
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 374 AAAPPSEETARPSPYAQTPSSANHPPHTN 460
A APP + +P TP S+ PH+N
Sbjct: 1234 AKAPPVPAPSSEAPSVSTPRSSVPSPHSN 1262
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +2
Query: 362 LRSVAAAPPSEETARPSPYAQTPSSANHPPHTNT----ENQTAPEKTKPT 499
LR +APP PSP + P + PP ++ AP K+ P+
Sbjct: 137 LRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 222 FMPKNRKISKLEVIQHVIDYICDLQS 299
++P +RK++K ++ +YI LQS
Sbjct: 472 YVPLSRKLNKATILSKATEYIKSLQS 497
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 377 AAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPE 484
A+ +E A Y +PS + PH TE +P+
Sbjct: 73 ASSSEDEIAPKYLYPSSPSKSTKKPHNETEPLLSPQ 108
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 422 QTPSSANHPPHTNTENQTAPE 484
QT ++ +PPHT+ E PE
Sbjct: 15 QTSKTSENPPHTSNEYSGKPE 35
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 365 RSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKT 490
R A P E PSP ++ H +N + + EKT
Sbjct: 144 RKRTARPKKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKT 185
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +2
Query: 266 ACYRLYLRPSISVGES 313
ACYR YL IS GES
Sbjct: 154 ACYRQYLDSRISEGES 169
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.6 bits (51), Expect = 8.6
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 141 SGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEV--IQHVIDYICDL 293
SG++ G+ E+ M+ K + +PF I+ +EV IQ C+L
Sbjct: 2149 SGKIIHIDFGDCFEVAMHREKFPEKIPFRLTRMLINAMEVSGIQGTYKITCEL 2201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,362
Number of Sequences: 5004
Number of extensions: 29716
Number of successful extensions: 133
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -