Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12b15
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18470.1 68415.m02151 protein kinase family protein contains ... 33 0.084
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re... 31 0.59
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 30 0.78
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 30 0.78
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 30 0.78
At4g34440.1 68417.m04894 protein kinase family protein contains ... 30 0.78
At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family pr... 30 1.0
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 29 1.4
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 29 1.4
At3g51330.1 68416.m05619 aspartyl protease family protein contai... 29 2.4
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 2.4
At4g28485.1 68417.m04075 hypothetical protein contains Pfam prof... 28 3.1
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 28 3.1
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 28 3.1
At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein ... 28 3.1
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 3.1
At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr... 28 3.1
At5g42860.1 68418.m05224 expressed protein 28 4.2
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 28 4.2
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote... 28 4.2
At4g15980.1 68417.m02426 pectinesterase family protein contains ... 28 4.2
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr... 28 4.2
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 28 4.2
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 4.2
At3g01180.1 68416.m00023 glycogen synthase, putative similar to ... 27 5.5
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 5.5
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 27 7.3
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 27 9.6
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 9.6
At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacya... 27 9.6
At3g52110.1 68416.m05719 expressed protein 27 9.6
At1g45688.2 68414.m05201 expressed protein 27 9.6
At1g45688.1 68414.m05202 expressed protein 27 9.6
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 33.5 bits (73), Expect = 0.084
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 368 SVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPE 484
S +APP+ T+ PSP + T S+ + PP + + T P+
Sbjct: 4 SPESAPPTNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQ 42
>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
reduced phytochrome signaling (REP1) / basic
helix-loop-helix FBI1 protein (FBI1) / reduced
sensitivity to far-red light (RSF1) / bHLH protein 26
(BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
in far-red 1 (bHLH-like protein HFR1) (Reduced
phytochrome signaling) (Basic helix-loop-helix FBI1
protein) (Reduced sensitivity to far-red light)
[Arabidopsis thaliana]
Length = 292
Score = 30.7 bits (66), Expect = 0.59
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +3
Query: 126 VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 305
VP++ +R R E +M KLQ LVP K K+S V+ I+Y+ +LQ L
Sbjct: 133 VPSVTRKGSKRRRRDEKMSNKM--RKLQQLVPNCHKTDKVS---VLDKTIEYMKNLQLQL 187
Query: 306 ENHPAVG 326
+ VG
Sbjct: 188 QMMSTVG 194
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 353 VATLRSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTA 478
+AT+ + + E +RPS + + S NH P TN E+ A
Sbjct: 310 IATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRA 351
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 353 VATLRSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTA 478
+AT+ + + E +RPS + + S NH P TN E+ A
Sbjct: 310 IATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRA 351
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 353 VATLRSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTA 478
+AT+ + + E +RPS + + S NH P TN E+ A
Sbjct: 310 IATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRA 351
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 30.3 bits (65), Expect = 0.78
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 380 APPSEETARP-SPYAQTPSSANHPPHT-NTENQTAPEKTKP 496
APP++ET+ P SP + P AN P T + APE + P
Sbjct: 60 APPTQETSPPTSPSSSPPVVANPSPQTPENPSPPAPEGSTP 100
>At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family
protein
Length = 359
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 120 ASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 296
A+ P + RV+R R E + KLQ+LVP M K S +++ +DYI DLQ
Sbjct: 286 ATHPRSIAERVRRTRISER------MRKLQELVPNMDKQTNTS--DMLDLAVDYIKDLQ 336
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 383 PPSEETARPSPYAQTPSSANHP-PHTNTENQTAPEKTKPT 499
PPS P PY +PS+ +HP P ++T + P T PT
Sbjct: 53 PPSSNCGSP-PYDPSPSTPSHPSPPSHTPTPSTPSHT-PT 90
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 386 PSEET-ARPSP--YAQTPSSANHPPHTNTENQTAPEKTKP 496
PS T + PSP + TPS+ +H P +T + T T P
Sbjct: 65 PSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPP 104
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 383 PPSEETARPSPYAQTPSSANHP-PHTNTENQTAPEKTKPT 499
PPS P PY +PS+ +HP P ++T + P T PT
Sbjct: 53 PPSSNCGSP-PYDPSPSTPSHPSPPSHTPTPSTPSHT-PT 90
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 386 PSEET-ARPSP--YAQTPSSANHPPHTNTENQTAPEKTKP 496
PS T + PSP + TPS+ +H P +T + T T P
Sbjct: 65 PSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPP 104
>At3g51330.1 68416.m05619 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 529
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 374 AAAPPSEETARPSPYAQTP-SSANHPPHTNTENQTAPEKT 490
+ PP ET PSP A TP S PP T Q P +
Sbjct: 461 STTPPPPETEAPSPSASTPLPSLLPPPAAATPPQIDPRNS 500
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 374 AAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKPT 499
A +PP+ A PSP+ P + + T+P K PT
Sbjct: 186 ATSPPANPNAPPSPFPTVPPKTPSSGPVVSPSLTSPSKGTPT 227
>At4g28485.1 68417.m04075 hypothetical protein contains Pfam profile
PF05078: Protein of unknown function (DUF679)
Length = 165
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 368 SVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTA 478
SV +P + A SPYA +P+S++ P T E QTA
Sbjct: 28 SVPPSPVAGSPASSSPYAPSPASSS-PLPTPLETQTA 63
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 356 ATLRSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKP 496
AT V+A PP T P P P AN PP ++ +P P
Sbjct: 43 ATPPPVSAPPPV--TTSPPPVTTAPPPANPPPPVSSPPPASPPPATP 87
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 356 ATLRSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKP 496
AT V+A PP T P P P AN PP ++ +P P
Sbjct: 43 ATPPPVSAPPPV--TTSPPPVTTAPPPANPPPPVSSPPPASPPPATP 87
>At1g49900.1 68414.m05596 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 917
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 383 PPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKT 490
P ++ RP P PP ++ QTAP K+
Sbjct: 155 PQTQTLTRPQPQTHKTQLQRPPPQLQSQTQTAPPKS 190
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 383 PPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKP 496
PP + RP+P +PS + P H + + PE+T P
Sbjct: 231 PPPPGSKRPTPSPPSPSDSKRPVHPSP--PSPPEETLP 266
>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
protein
Length = 362
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 195 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 311
L KLQDLVP M K S +++ + +I LQ L+N
Sbjct: 309 LKKLQDLVPNMDKQTSYS--DMLDLAVQHIKGLQHQLQN 345
>At5g42860.1 68418.m05224 expressed protein
Length = 320
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 368 SVAAAPPSEETARPSPYAQTPSSANHP-PHTNTENQTAPEKTKP 496
S++A+ P+ RP+ + Q+PS +H T T + P T P
Sbjct: 11 SLSASSPTRSPRRPAYFVQSPSRDSHDGEKTATSFHSTPVLTSP 54
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +2
Query: 347 LSVATLRSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKPT 499
L T+ V + P + P P P PP +T+ + P + +PT
Sbjct: 48 LPKTTMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPMPSTQIPSLPNQVQPT 98
>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
kinase, putative protein kinase TMKL1, Arabidopsis
thaliana, PID:E353150
Length = 757
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 353 VATLRSVAAAPPS-EETARPSPYAQTPSSANHPPHTNTENQTAPEKTKPT 499
+ ++ S + PP+ ET P+ + S+A P T NQT K KP+
Sbjct: 288 LCSIPSTLSNPPNISETTSPAIAVKPRSTAPINPLTEKPNQTGKSKLKPS 337
>At4g15980.1 68417.m02426 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 701
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 380 APPSEETARPSPYAQTPSSANHPPHTNTENQTA 478
+PP+E+++ SP + SS N P +++ENQ++
Sbjct: 239 SPPNEDSSDDSP-STVDSSENQPVDSSSENQSS 270
>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
protein (bHLH125) contains Pfam profile: PF00010
helix-loop-helix DNA-binding domain; supporting cDNA
gi|20805889|gb|AF506369.1|
Length = 259
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 156 RHRDGENA---EIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 296
+HRD E E+ +L+ L+PF K S + I ++YI DLQ
Sbjct: 77 KHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQ 126
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 380 APPSEETARPSPYAQTPSSANHPPHTNTENQTAP 481
+PP E PSP + +P S PP ++ E P
Sbjct: 151 SPPPESLPPPSPESPSPPSPEPPPPSSLEPPPPP 184
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 195 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENHPAVGQFDA 338
L KL++L PF+ + R+ + E + H I Y+ + S+L+ F+A
Sbjct: 1618 LGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEA 1665
>At3g01180.1 68416.m00023 glycogen synthase, putative similar to
glycogen synthase Q43847 from [Solanum tuberosum]
Length = 792
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 386 PSEETARPSPYAQTPSSANHPPHTNTENQTAPEKT 490
PS+ P++ +S+ PP+ + T+PEKT
Sbjct: 195 PSDVATNGKPWSSVVASSVDPPYKPSSVMTSPEKT 229
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 377 AAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKP 496
AAPP T P AQ P+S PP T K P
Sbjct: 50 AAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAP 89
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 374 AAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAP 481
A +PP + PSP Q PSS PP ++ Q AP
Sbjct: 1123 AGSPPLPHESPPSPPPQPPSS---PPPPSSPPQLAP 1155
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 356 ATLRSVAAAPPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTKPT 499
AT VA PP A P P A TP+ A PP T P P+
Sbjct: 35 ATPPPVATPPP---VATPPP-AATPAPATPPPAATPAPATTPPSVAPS 78
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 350 SVATLRSVAAAPPSEETARPSPYAQTPSSANHP--PHTNTENQTAPEK-TKPT 499
S T S +PPS PSP + TPS + P P T T + P T PT
Sbjct: 438 SPPTTPSPGGSPPSPSIV-PSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPT 489
>At3g60270.1 68416.m06737 uclacyanin, putative similar to uclacyanin
3 GI:3395770 from [Arabidopsis thaliana]; contains Pfam
profile PF02298: Plastocyanin-like domain
Length = 187
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 344 RLSVATLRSVAAAPP-SEETARPSPYAQTPSSANHPPHTNTEN 469
+L+V L +V+ PP S PSP A +PS + P + N
Sbjct: 115 KLAVQVLAAVSLEPPPSPSAPSPSPSAPSPSPSAPSPSPSPGN 157
>At3g52110.1 68416.m05719 expressed protein
Length = 362
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 383 PPSEETARPSPYAQTPSSANHPPHTNTENQTAPEKTK 493
P RP + TP+S+ HP +T N+T E+ +
Sbjct: 50 PECNHPKRPEDFFSTPTSSKHPSLRDT-NETLTEQNQ 85
>At1g45688.2 68414.m05201 expressed protein
Length = 248
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 368 SVAAAPPSEETARPSPYAQTPSSANH 445
S+AA+ P+ RP Y Q+PS +H
Sbjct: 11 SLAASSPARSPRRPVYYVQSPSRDSH 36
>At1g45688.1 68414.m05202 expressed protein
Length = 342
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 368 SVAAAPPSEETARPSPYAQTPSSANH 445
S+AA+ P+ RP Y Q+PS +H
Sbjct: 11 SLAASSPARSPRRPVYYVQSPSRDSH 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,451,181
Number of Sequences: 28952
Number of extensions: 161343
Number of successful extensions: 807
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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